Cflo007188.1
Basic Information
- Insect
- Camponotus floridanus
- Gene Symbol
- -
- Assembly
- GCA_003227725.1
- Location
- NW:3816863-3823522[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5 4e+02 1.3 0.1 3 11 133 141 131 148 0.65 2 14 7.2 5.7e+02 0.8 0.0 1 23 271 298 271 298 0.84 3 14 0.00045 0.036 14.0 0.2 1 23 303 325 303 325 0.94 4 14 1e-05 0.00081 19.2 1.2 1 23 333 355 333 355 0.98 5 14 1.1e-05 0.00084 19.1 0.1 2 23 363 384 362 384 0.96 6 14 5.5e-06 0.00044 20.0 1.3 1 23 390 412 390 412 0.99 7 14 8.4e-06 0.00067 19.4 1.9 1 23 419 441 419 441 0.98 8 14 0.0002 0.016 15.1 4.4 1 23 447 469 447 469 0.95 9 14 4.2e-06 0.00034 20.4 0.1 1 23 475 497 475 497 0.98 10 14 4.2e-07 3.4e-05 23.5 1.2 1 23 503 526 503 526 0.96 11 14 9.1e-05 0.0073 16.2 0.7 1 23 532 555 532 555 0.95 12 14 1.1e-05 0.0009 19.0 2.5 1 23 561 583 561 583 0.99 13 14 6.9e-05 0.0055 16.5 0.4 1 23 589 611 589 611 0.94 14 14 0.00043 0.034 14.0 0.2 1 23 617 641 617 641 0.94
Sequence Information
- Coding Sequence
- ATGTTCCAGGTCCTTTCTGCGGTGGGACAGCTGCCGGGGAGTAAAAACGCGCGGCCGAATAACGCTGACTCGAGATTCCAACGTCAGTCGCCATTTTCGGACCGGATAAGCCTCTCGCGCAAGGGCGTGAACGCCGTCGTCAGGACAGTTTCGCCGTTTCACTCGCTGCCAATCGTCCGCATCCGTGGGACGAAAATTTCAAcagAAAAAATGACAGCTGATAAGGATTGCACACACTGCTTAGTGTGCAATAGTAAAGCTGGAGTATCTACTAGAAATAGCGTTCGCATCTTCAATGATTCGACTAATACTACATCGGAGAAGTCACTTGCTGATATTATAGCAAccgttttaaaaaaagatattaatgagGAATCTGTTCATTCCCTTgtcatttgtaaaaaatgctttaaattattcaatgagGTTGATGAACTTGAAACTAGATTAACAGAAATCAAGCTTGAATtgtttaacaattataaaaaaacagtaAAGAAATTGcctaatatactttataatgaAGAAGAATATAATGATCATGATTACATAGACAGTACAGAAAACAATGATGAAACAGAGGAGAGAGATGATGTACGAAATGATAAGGACTTTACACCAGATGATACAccagaagaagaagaagaatttcTTGGAAATACAGAAGAAATTGTATTGGAAGTTGAAGAACTAAATGATAATTCGGATGAATCTGTcacaatacaaaatttaaaaaagaaattgaaaaagaaactcaataTGAAAGTAGACACTAATCAAGAACAAaTTGTACTTAGAGATGAATCTTCATACAGTTGCTTGTTATGTACAGATGAAAAGGAAAAAGTTACGGCAGATGCTAAAACTATTATAGCGCATATGAAAGATGTACATGACGCTCGTTTGTATATTTGCGACGTGTGTGGGCAAGATTTCAGGAAAAGAAACGAACTTTCCTTACATCTTGATGATCATGTTGCAAAGGAGGAAGGGGATTTTCAATGTGAGATatgtaatagaatatttagTAACTTACGATTATTCCGAATTCATAAAAGGATACATTATCCGCAAGTGAAGTCATGGCCCTGTGACGTATGTGGAAAGAGATATAGttctaaaaatttattggatGAACACATGAATATACATATGGGTGTACGCCCATATGTGTGCGAGACATGTAATAAAGACTTTGCAtccaaatatacatataaagcgCACGTAAAAACACACGAAGTACGACCTCGTCCATTCGAGTGCACTCAATGcgataaaacatttttgaacCAGCAAAATTTGAATCAACATGAACGAACACATAAGGGAGTAAAGGAGCATGTATGTCACCAATGTGgCAAAGCTTTTGGCTCACATCACAATTTAGAAGTACACAACATAGTGCATACTGGATATAAACCctatatatgtagaatatgTGGCAAAGCATTTGCACGTAAAGCAGAAATACGCGATCATGAACGAACTCATACAGGTGAGAAACCTTATCAGTGTGAATTCTGCGGAGCAACATTTAGTCAGAGATCAAATCTGCAATCCCACAAGCGAGCAACACATTATAATGATAAACGTTACATATGCGACAAATGTCAAAAAGGTTTCAAACGAAGAAGGTTGTTGGATTATCATATAAAAGCAGCTCATACTGGCGAAAGACCATACAAATGTGACGTATGTACAGCTACATTCGTCTATCCTGAGCACTTTAAGAAACACAGGCGCATACATACGGGCGAGAAACCTTTTCTTTGTGAGGTCTGTGGTAAAGCTTTTAATAGCAGGGATAACAGAAATGCACATAGATTTATTCATAGTGATAAAAAACCATATGAATGTTTGAGATGTGGAATGGGATTTATGAGAAAACCATTGCTTTATGCCCATATGCAAACTcaggGTCACTTAAATGATACCATAGTAGTGAATCAACCACGATTGACAACAGAAGAAGAGCAAGTAATAACGATTCCTGATAATGGCGAACTATTGATGGAAGACGCTGAAACTGGACagTTGAATGAAACCGGATTGTATGTGACTGAATTGAAAGACCACGTAATTATACAAGAAGGAGATCAAATTTATAACGACGAGGctgttttattgaaaataccTGCAGAAGAAACTGTAAGCGGTGAAGTGAGTCATATCGTTGTTGAGGATCAGATGGATTTCGTGGAAAATGATGATATTGAATGCAAAACCGAAGCTGTAGAACAAGTGGAAACGGTTTACACTTATAATGAGAATGATGAAGGTGAGACAATAGTTGTGCCAGCCACTACGGATTATAAAGAGATAGTAGAGGACAAAAATGTGCGATTAGTACAGATCAGATTTCCCTCATCTGTTGATGGAGAGGGTAGAAGTTGGTTGAGTTTAGTACCAAATACttga
- Protein Sequence
- MFQVLSAVGQLPGSKNARPNNADSRFQRQSPFSDRISLSRKGVNAVVRTVSPFHSLPIVRIRGTKISTEKMTADKDCTHCLVCNSKAGVSTRNSVRIFNDSTNTTSEKSLADIIATVLKKDINEESVHSLVICKKCFKLFNEVDELETRLTEIKLELFNNYKKTVKKLPNILYNEEEYNDHDYIDSTENNDETEERDDVRNDKDFTPDDTPEEEEEFLGNTEEIVLEVEELNDNSDESVTIQNLKKKLKKKLNMKVDTNQEQIVLRDESSYSCLLCTDEKEKVTADAKTIIAHMKDVHDARLYICDVCGQDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDVCGKRYSSKNLLDEHMNIHMGVRPYVCETCNKDFASKYTYKAHVKTHEVRPRPFECTQCDKTFLNQQNLNQHERTHKGVKEHVCHQCGKAFGSHHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYICDKCQKGFKRRRLLDYHIKAAHTGERPYKCDVCTATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLRCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEEQVITIPDNGELLMEDAETGQLNETGLYVTELKDHVIIQEGDQIYNDEAVLLKIPAEETVSGEVSHIVVEDQMDFVENDDIECKTEAVEQVETVYTYNENDEGETIVVPATTDYKEIVEDKNVRLVQIRFPSSVDGEGRSWLSLVPNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264465; iTF_00109987; iTF_01077658; iTF_01254983; iTF_00730227; iTF_00729513; iTF_00730944; iTF_00869061; iTF_00867625; iTF_00280106;
- 90% Identity
- iTF_00109987;
- 80% Identity
- -