Nrev031448.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344862.2:17817181-17823019[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.057 1e+03 0.9 0.1 21 45 134 158 122 161 0.80 2 4 3.5e-06 0.063 14.4 0.5 21 44 162 185 158 192 0.90 3 4 3.3e-06 0.06 14.5 0.0 23 52 220 249 211 251 0.90 4 4 0.14 2.5e+03 -0.3 0.0 22 47 247 271 245 274 0.81
Sequence Information
- Coding Sequence
- atgaatacaacCATTCGAAGTGCTGGCAGGGAAGTTATTTATAAGGTGTACAGGCGTTGTCTGGCGGAACATGAGGCCCAAACTATTCTTTCCGATCTTAACAATGTTTACCAAAGAGCCGCTGATATGACAGACTCTCCTCCGGCGCCAGGGTTGGTGGATGATGAGCAGGAACCTACACAAGTACAGTCGCCCGGCGTCGTTCGCAACAACTCGCTCAAGTGGAGCGTGCCCCCCGGACTCACTGTAGGACATAACAaaatcAAAAAACCGAACCACTTGCATTCTCAACAACGGCGGAACAATATGAACCAAAATAACTTTGTAGATTGTAATGTTGCTATAACCACTGATGACACAAACACCAGTCCCGAAGGAACTAACAACGACCCCCAAACCACAGACAAACCGTTCAAATGTCAACTATGTCAATTGAGTTTCACACGAAAATATTCCCTCAACCGACACATTCGAGTGCACACTGGCGAGAAACCGTATACATGCGATATTTGCCACAGGAGTTTCAGACAGTCGAATGCTTTACATTATCACATACGAACACACAGCGGAGAGAAGCTTTACAAGTGTGATGTCTGTCAGAGCAGCTTCAGCAGGAAGGACTACTTGTACAGCCACATGCGTATTCACACTGGTGCGAGACCTTACACGTGTGATGTGTGCCACAGTAGTTTCAGTCAGAAGACTAACTTGGATCGGCACGTGAGCCTCCACAGCGGAGAGAAGCCTTTCAAGTGTGAAGCCTGTCCCAGCAGCTTCTCTCATAAGTCTGTTTTTAAACGACATCTGTTGAAACATGTAAAAATTGATTTAGTAGAAGAAAATTTGACAAATGTTGAACTTAATAACATAGAACCTGTAGAAGATCGGACCCCTCAAGAGACTGTGTCAtga
- Protein Sequence
- MNTTIRSAGREVIYKVYRRCLAEHEAQTILSDLNNVYQRAADMTDSPPAPGLVDDEQEPTQVQSPGVVRNNSLKWSVPPGLTVGHNKIKKPNHLHSQQRRNNMNQNNFVDCNVAITTDDTNTSPEGTNNDPQTTDKPFKCQLCQLSFTRKYSLNRHIRVHTGEKPYTCDICHRSFRQSNALHYHIRTHSGEKLYKCDVCQSSFSRKDYLYSHMRIHTGARPYTCDVCHSSFSQKTNLDRHVSLHSGEKPFKCEACPSSFSHKSVFKRHLLKHVKIDLVEENLTNVELNNIEPVEDRTPQETVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076935;
- 90% Identity
- iTF_01076935;
- 80% Identity
- iTF_01076935;