Nrev007149.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344841.2:9534064-9541322[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0071 1.3e+02 3.8 0.7 26 40 45 59 41 64 0.89 2 9 1.5 2.7e+04 -3.6 0.0 23 30 251 258 244 261 0.78 3 9 0.00088 16 6.7 0.1 21 46 277 302 272 309 0.86 4 9 0.072 1.3e+03 0.6 0.0 21 48 305 332 301 337 0.81 5 9 0.0059 1.1e+02 4.1 0.1 21 43 333 355 321 359 0.87 6 9 4.3e-05 0.77 10.9 0.1 21 45 361 385 357 392 0.87 7 9 0.0016 28 5.9 0.1 21 51 389 419 385 421 0.84 8 9 0.058 1e+03 0.9 0.1 21 44 417 440 413 444 0.81 9 9 2.9e-05 0.52 11.5 0.1 11 46 434 470 428 476 0.83
Sequence Information
- Coding Sequence
- ATGGAGAAATCAATGTGCAGGATATGTTTAGCTAAAAACATTCGCATGTATTCTATTGTAAATACGGATTTGCACCGTGTATATGAGACACTATCAGAAAATGTGcTGATAAATGGATTTAAGCCATTACTAGCATGCTATATTTGTTACTCTCGGCTGAGGAATAGCCAGCAGTTGATGATAAAATGTCGACAGTCAGAGGAGACGCTCACCCAAATTTTAAATGGTAATCAGCTCAGCTATCATTTTATTGATGAGAAGTTGTCAAATTTTAATGCATTCTCAATATCACCAGtacatcaaataaatataactgaTGATGACGACGCGAAAGTCAAAGCAGAGGAGGCATCTGTCATAGAAATTGAAATTTTGAAAGAAGAAATTGCTAAAGTACCCCTCGTAGAAGCAGATCCCCTGGACCCCTCGCAAGTGAACCCTAAACGTAACTTGCTTGCCAGCACAAGTTATGAACATGATATTGATGTGAAACAAGAAGTGAAATTAGAAGAATATGATGGTATAGAAATCTCTACGGATTTCGATGATAGTAAagATTACTCCGATCATAAGTCCGATGTTGACAAGTCTTCAGACACTGACAGTCGTAAAGGTAAACTCAAAATTAAAGATGGCATTCACAAGAAAAGGTCTCACGTTCGTAAGATAAGGTCTGATAAGAAACGTAGCAGCAAAAAGCATAAAGAGAAAGGGGATATCGTGAGAACCGGCCGAAGAAAAACTGGCATAAAACCTTTCAAATGTGATATCTGTCAAAGGAGTTTTACTTACAAAACTCTGTTGATTAATCATATTCGCGTCCACGAAGATGAACAACCTTTCAAGTGTGATAAATGTTTTCGTAGTTTTAGAAcgaaaaatagtttatttagacaTATTCGTACACATACTGGTGAGAAACCATATAAATGCGATGTATGTCAAAAGCGGTTCACGGTTGACAGTACCTTGAAGAAACACATACGTATACACACTGGGGAGAAACCGTACAAATGTGAAATTTGTCATAAAAGCTTCAACCAACAATCGGCTTTGAAGAGTCATACTTACACCCATACTGGTGAAAAGCCTTTCCAATGTTATGTTTGTCAAGCTAGCTTCAGTCAAACGAGTAATTTAAAGACGCACCTCCGTAAGCACTCTGGTGAAAAACCGTACAAATGTGATGTATGTCAGAGTACATTCACACAGCAAAGTTCATTAGAAAAACATATTCGTATACACACTGAAGAGAAGCCATACAAATGTCATATTTGTCAAAAAAGCTTTACACAAAAGGGCACAATGAAAATCCACATCCGTAATCATACTGGCGAGAAACCTTATAAATGCGATATTTGTCATAGTAGTTTTAAAATGAAACGAGAATTGAACAGGCATGCGCAAAtacactctggtggaaaatcttTCAAATGTGATCTCTGCGAGACTAGTTTCACTGATAGATCAAATTTTGTGCGCCATGTCCGTAAACACGAAGAACCTACTCAAGAGCCTTTTCCGAAAGAATCTCCCTAA
- Protein Sequence
- MEKSMCRICLAKNIRMYSIVNTDLHRVYETLSENVLINGFKPLLACYICYSRLRNSQQLMIKCRQSEETLTQILNGNQLSYHFIDEKLSNFNAFSISPVHQINITDDDDAKVKAEEASVIEIEILKEEIAKVPLVEADPLDPSQVNPKRNLLASTSYEHDIDVKQEVKLEEYDGIEISTDFDDSKDYSDHKSDVDKSSDTDSRKGKLKIKDGIHKKRSHVRKIRSDKKRSSKKHKEKGDIVRTGRRKTGIKPFKCDICQRSFTYKTLLINHIRVHEDEQPFKCDKCFRSFRTKNSLFRHIRTHTGEKPYKCDVCQKRFTVDSTLKKHIRIHTGEKPYKCEICHKSFNQQSALKSHTYTHTGEKPFQCYVCQASFSQTSNLKTHLRKHSGEKPYKCDVCQSTFTQQSSLEKHIRIHTEEKPYKCHICQKSFTQKGTMKIHIRNHTGEKPYKCDICHSSFKMKRELNRHAQIHSGGKSFKCDLCETSFTDRSNFVRHVRKHEEPTQEPFPKESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076797;
- 90% Identity
- iTF_01076797;
- 80% Identity
- iTF_01076797;