Nrev020834.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947037095.2
- Location
- OX344851.2:17565428-17575064[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-79 5.1e-75 253.6 26.3 1 297 11 294 11 297 0.88 2 2 1 3.6e+04 -8.7 14.8 16 156 308 352 293 368 0.40
Sequence Information
- Coding Sequence
- ATGTTGTATAAAGTTGTTGTGATATTGCAGGCGGAACAGCGTCTCGCAGCGAGACGCGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGAGAGAGCTCGAGCGACAGCAGCGGGAACAAGAGGATCATGCTGATAAGGCTTACGATATGTACGCCGagACAGTGGGCCGCCGCGGAGGCTCGCGGTTGGCGGCGCTCAGCCCTGGCGTGCACTCGCCGAGGCGGAGCTCCGAAGACTCCGTGGACGACACCTTCAGCCTCAAAGATCTtaggCATGAGTTAAAAGAGGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCAGCGCTCGGCTACCAGCTCGAGCTACTCAAGGACAGGATAGAGGAGCTGCACGAAGAGTACTCGCAGTTGCAGCGCGAACACCGCGAAAAATGCTCATCGTTTGAGCGTCTAAAACGCGAACACGAGTCCTTAACCCGAGAGCTGAGCGCCGCGCGGGACGCCATCCGAGCCCGAGACGCGGCCGCGAACGCGTCGGGCTTCGCCTTCGTGGAGGCCGCCTCGCTGGAGCCGTGCGCCCGCAGCGGCCAGGCCGTGGGCGCCGTGCCCTCGCTGGCGCTCGTGTCGCACTCCGCGGAACAGCTGCTCAACGATGTCGGGGAAGGCACGCTAGatGTCCGGTTGCAAAAGTTATTAACGTCGAAGCAGTCATTAGAATCAGAAGTACGTAAACTGAAGCTACAGCTGAACGAAGAACGGGCGGCGAGACAAAATGGAGTCGCCAACCACCACGATCAGGAATATGAAAACGAAtTGGAGACGGTACGCAAGTCGGTGGCGGAGGCGAAggggcgcgcggcgcgggccGAGGCGGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCTGCACGACGAGAGCGAGGAGGCGCTCAAGCAGGAGAAACGGAAGCTGCAGCGAGAGgCCCGAGAGGCGCTCAACAGAGTCGAAGAGTTGGAGACAGAAAACAGCCACCTCACGAAACGACTAGACAAACTCAAGAACGCCAAGTCCGCACTCTTGAAGGACCTGTGA
- Protein Sequence
- MLYKVVVILQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALSPGVHSPRRSSEDSVDDTFSLKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYSQLQREHREKCSSFERLKREHESLTRELSAARDAIRARDAAANASGFAFVEAASLEPCARSGQAVGAVPSLALVSHSAEQLLNDVGEGTLDVRLQKLLTSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKSVAEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDLHDESEEALKQEKRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -