Nmun029627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nudaria mundana
Gene Symbol
sip1
Assembly
GCA_963556515.1
Location
OY748306.1:6013990-6021817[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-59 5.7e-55 188.2 2.1 6 275 371 622 366 622 0.96

Sequence Information

Coding Sequence
ATGTCGGACGACGAAGTAATACGGTTTGAAATCAGCGACTATGATTTGGATAATGAATTTAATCCAAATAGAAACAGAAGAGCCAAGAAAGAACATCAAATTTACGGTGTATGGGCCAAAGATAGTGATGAGGAGGATAATGAAGATAATATTAGAAAAAGGGTCCGCAAACCGAAAGATTTCTCAGCACCAATTGGATTTGTGGCTGGTGGTGTGCAGCAGGCAGGCAAGAAGAAGGAAGAAACGAAGAAATCGGAAATACTCTATGCAGAAGCTACTCACTCCAAATTTGTCCAAGACAGTTCCGATGAGGAGGTCATACAGAATCCAGATGAGACAGAGACAGCAGGCATTAGGAGACAAGGACAGGGTATGAAGAGTGTCAATTTGGGTGGAAATGTCGGAACCTGGGAGAGACATACCAAAGGTATTGGGGCTAAGCTGCTTCTACAGATGGGCTACCAACCTGGCATGGGTCTAGGCAAAGATCTTCAAGGTATATCAGCACCGATTGAAGCCACGGTCAGGAAGGGCAGGGGAGCTATTGGCGCTTATGGACCTGAGAAATCAGCGCAAAAAGCAAAGAAAGAGGCCGAGCGTCGTTTAAAAGAGAAAGAAGAACAAGAGAAAGGCCCGAGTGAGAAGACTTACAATTGGAAGAAGTCCCACAAAGGGAGATATTTCTACAAAGATGCCGCTGACGTCATACAAGAGGGTAAACCCACAATGCATACTATATCCAGTAGTGAGTTATCCCGCGTGCCGGTTATCGACATGACGGGTCGCGAGAAGCGAGTACTGAGCGGCTACCACGCGCTACGGGCGGCGGCGCCGAGGTTCGAACACGAGCCGAGAAGGAAATGTGTTAACTTCTCAGCACCGGACTTGGCGCATAATCTTGATTTAGTCGTCGAATGCTGTGAACAGgaTATAATCCAAAACGCCCGCGAACTACATTCAGCGGAGGACGAAATAGTAGTGTTAGAGCGAGACCTACAAGAGTGTACTGTCAAGTTGCAAGAGCAGGACAAAGTGATAGCCAAAGTGGAGGATATCGCAGAACGAGTGTTCTACTTGAACCAAGCGGACGTGTCGTTGGAGAGGAACTATGATGTGTTGGCCGAGTTAAAGgagTTCTATCCCACAGAGTACGAAATGTTCGGTCTAGGAACCATAGCGGGTAACATAGTGAGTCCGTCGTTTTCCGCACTAATAGCCGCGTGGGACCCGTTGCAGAACCCTGAAGAACCGATACCCACGTTCTTGAAGTGGAGGAAATTATTAACTGAAGATGCCTACAATAGTTTATTGTGGCAACATTTTGTGCCGCAGATTAGTGCGGTAGCTGAAAGCTGGAACCCTCGCAACCCAGACGCCATGCTCCTCGCCATGGTGTCGTGGCAGGAGGCGTGTCCCGCGTGGGTCACACAGAACTGCATTACGCGCTACGTGGTCCCGCGCGTGCTGGCCGCCGTGAGGGCGTGGGACCCCACCGGGGACACTCAGCCGCTGCATCAGTGGGTGCTGCCCTGGCATGATATGGCAGGTGACGCGCTATCCACAGCAGTTTACCCCCTGATCAGGTCTCGCCTGGCCGCAGCCCTGGCGGCCTGGCACCCGGCGGATGGCTCGGCCCGGGGCGTGCTGGGCGCGTGGAAGGACGCGTGGGGCGGAGCACTAACCGCCATGCTACATCAATATATTGTGCCTAAGTTGGAACATTGTCTGCAGCATGCACCGTTGGAACTTGTTGGGAGGGAGAATACTGCATGGCTCTGGGTAGTGGAATGGCTAGACCTGCTAGGCCCGACCGGCGTGGCAGGAATAGCAGTACGTACGTTACTGCCACGTTGGTTAGCCGCACTAGCTGCTTGGCTGAATACTAATCCACCTCATGCTACTGTACTCAACTCGTATACTGACTTCAAGaAATTCTTCGCTAATATGTAA
Protein Sequence
MSDDEVIRFEISDYDLDNEFNPNRNRRAKKEHQIYGVWAKDSDEEDNEDNIRKRVRKPKDFSAPIGFVAGGVQQAGKKKEETKKSEILYAEATHSKFVQDSSDEEVIQNPDETETAGIRRQGQGMKSVNLGGNVGTWERHTKGIGAKLLLQMGYQPGMGLGKDLQGISAPIEATVRKGRGAIGAYGPEKSAQKAKKEAERRLKEKEEQEKGPSEKTYNWKKSHKGRYFYKDAADVIQEGKPTMHTISSSELSRVPVIDMTGREKRVLSGYHALRAAAPRFEHEPRRKCVNFSAPDLAHNLDLVVECCEQDIIQNARELHSAEDEIVVLERDLQECTVKLQEQDKVIAKVEDIAERVFYLNQADVSLERNYDVLAELKEFYPTEYEMFGLGTIAGNIVSPSFSALIAAWDPLQNPEEPIPTFLKWRKLLTEDAYNSLLWQHFVPQISAVAESWNPRNPDAMLLAMVSWQEACPAWVTQNCITRYVVPRVLAAVRAWDPTGDTQPLHQWVLPWHDMAGDALSTAVYPLIRSRLAAALAAWHPADGSARGVLGAWKDAWGGALTAMLHQYIVPKLEHCLQHAPLELVGRENTAWLWVVEWLDLLGPTGVAGIAVRTLLPRWLAALAAWLNTNPPHATVLNSYTDFKKFFANM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441509; iTF_01360633; iTF_00706976; iTF_01436103; iTF_00823912; iTF_01197741; iTF_00823056; iTF_00157219; iTF_01502105; iTF_00908863; iTF_00404939; iTF_00637668; iTF_00636419; iTF_00282410; iTF_01166711; iTF_01152175;
90% Identity
-
80% Identity
-