Nfer027916.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- Aef1
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000320.1:1434043-1435369[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0082 76 4.5 0.2 22 48 188 214 177 218 0.85 2 4 3.8e-05 0.35 12.0 0.0 21 51 215 245 212 246 0.88 3 4 0.0084 77 4.5 0.1 21 51 243 273 241 274 0.87 4 4 0.00018 1.7 9.8 0.1 21 47 271 297 268 304 0.88
Sequence Information
- Coding Sequence
- ATGCATATAAAAACTCTGCAACATGCTCATGCTGCTGCAGCAGCGGCAGCAGCAATGCcaaattgtgaaattgtaaTCGTATCAGCTTCGCCTAacactaacaacaacaacaataataataataacaatgaaAGTACAAATGGGGCATCGAGTAACGGCAGTGGCGCCAATGGAGGCAGTGCTAACAATGgccatcaacatcaacaacagcaacatagTTCCTCAGCACCACCACCTACTGAAATTCCAATACCTTTTATGCATTTGGCGGGAGTAACAGCCGAGGCTCATGCTGCTGCCCAAGCGGCTGCTATGGCAGCTGCCCAAGCAGCAGCTGCTCAAGCCGCTGCAGCTGACCAGGGAGGTTCAAATGCTCCACCACCGGGTAGCGCGTTGGCCCATCATCATGCCATATTGCAGCAACATCCATTGGCTCATCTGGTGGCCACAGCTGCTCACAGTCCTGCTCTATCCGAACAACATTTTATAGCACGCGATGCTACCGTCTTGACTAATGGCCACAATGGCAACTCAACGTCGGCATCGGGTGGACCCGCCCCCGAAAAACCATTTCAATGCAACGTCTGCGAACGACGGTTCCGCCAATTAAGTACTCTCACGAATCATGTAAAAATTCATACTGGAGAAAAGCCGTACAAATGTAATGTTTGTGATAAAACCTTCCGTCAATCGTCCACTTTGACTAATCACTTAAAAATACATACCGGTGAGAAGCCATTTAATTGTACCTATTGTCCAAAACACTTTCGTCAATTGAGTACATTgacaaatcatttaaaaattcatacagGTGAAAAACCTTTTGAATGTGCCGTGTGTAAAAAACAATTCCGTCAATCTAGTACTCTAAATAATCACATAAAAATCCATGTTATGGACAAAGTCTACGTGCCCGTGAAGATCAAAACTGAGGAGGAGGAAGGATGA
- Protein Sequence
- MHIKTLQHAHAAAAAAAAMPNCEIVIVSASPNTNNNNNNNNNNESTNGASSNGSGANGGSANNGHQHQQQQHSSSAPPPTEIPIPFMHLAGVTAEAHAAAQAAAMAAAQAAAAQAAAADQGGSNAPPPGSALAHHHAILQQHPLAHLVATAAHSPALSEQHFIARDATVLTNGHNGNSTSASGGPAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00200414;
- 80% Identity
- iTF_01074828;