Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000070.1:6611490-6616620[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.1 2.1e+02 3.7 0.8 2 20 438 456 437 458 0.92

2 17 0.0026 0.25 12.9 1.5 2 19 504 521 503 523 0.95

3 17 3.1 3e+02 3.2 0.6 2 23 565 587 564 587 0.93

4 17 0.23 23 6.7 0.4 5 23 597 615 594 615 0.92

5 17 2.7e-05 0.0027 19.1 1.0 1 23 622 645 622 645 0.96

6 17 0.0028 0.28 12.7 3.5 2 21 653 672 652 674 0.94

7 17 0.67 66 5.3 0.0 1 20 683 702 683 704 0.93

8 17 0.15 15 7.3 1.0 1 20 724 743 724 744 0.96

9 17 0.052 5.1 8.8 6.1 1 23 753 775 753 775 0.94

10 17 0.4 39 6.0 0.1 1 23 791 816 791 816 0.97

11 17 0.059 5.8 8.6 1.0 2 23 829 851 828 851 0.94

12 17 0.0018 0.17 13.4 5.5 2 23 857 879 856 879 0.91

13 17 0.00068 0.067 14.7 3.4 2 23 883 905 882 905 0.95

14 17 0.12 12 7.6 3.2 1 23 911 934 911 934 0.94

15 17 0.00029 0.029 15.8 0.4 1 23 939 961 939 961 0.98

16 17 0.00051 0.05 15.1 3.3 1 23 967 989 967 989 0.98

17 17 0.53 52 5.6 0.8 5 23 1005 1024 995 1024 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.1	2.1e+02	3.7	0.8	2	20	438	456	437	458	0.92
2	17	0.0026	0.25	12.9	1.5	2	19	504	521	503	523	0.95
3	17	3.1	3e+02	3.2	0.6	2	23	565	587	564	587	0.93
4	17	0.23	23	6.7	0.4	5	23	597	615	594	615	0.92
5	17	2.7e-05	0.0027	19.1	1.0	1	23	622	645	622	645	0.96
6	17	0.0028	0.28	12.7	3.5	2	21	653	672	652	674	0.94
7	17	0.67	66	5.3	0.0	1	20	683	702	683	704	0.93
8	17	0.15	15	7.3	1.0	1	20	724	743	724	744	0.96
9	17	0.052	5.1	8.8	6.1	1	23	753	775	753	775	0.94
10	17	0.4	39	6.0	0.1	1	23	791	816	791	816	0.97
11	17	0.059	5.8	8.6	1.0	2	23	829	851	828	851	0.94
12	17	0.0018	0.17	13.4	5.5	2	23	857	879	856	879	0.91
13	17	0.00068	0.067	14.7	3.4	2	23	883	905	882	905	0.95
14	17	0.12	12	7.6	3.2	1	23	911	934	911	934	0.94
15	17	0.00029	0.029	15.8	0.4	1	23	939	961	939	961	0.98
16	17	0.00051	0.05	15.1	3.3	1	23	967	989	967	989	0.98
17	17	0.53	52	5.6	0.8	5	23	1005	1024	995	1024	0.85

Sequence Information

Coding Sequence: atggCGGTTAATGTTTCCACAATCGGCAGTGTCTGTTTATGTTGTAAAACAAACTCAGAAGTAGATGCTGGGAAAGATTTTCACGAAATTTACGATGAGGTGGGTCTCGAGCTGCAGTTACCAAACTtggtggaaaaattttttcatattaaagtgAACAATGGTGGGGCCAAACAACTCTGTGATGATTGCGTTAATCAACTTATTGACTTATATGATATGGAAGAACATTTTAAAGAAGAATGTAAAGTTTCGCATGTGGAAAGGccagaaaaaacaaataataaaaccaCAGACAGGCATACAAGTCATGAAACTAACTTACAAAGGACTACTGCCATTGAAGGTAGAAACTTAAGAGAAGCTGATCCTTTAACCCCCATCAATAGCAACCAACAAAATGGTACAAGGAAAGTAGATGATCCTAAATATGGAAATGTGGAGAACTTAATTGATAACGAAGGCCCGGTGTCTTTCGCTTTCGCACATAATCAGGATGATACTAGTGGCACTGAAAATTTTATGGAGGAGGAGTTCATAATTTTACACGAAAATGAAGACTCACAACATTTCAACGAAATAACTCCAAACAGCATATTAAAGGTAATAGACCTCTGCGACTCTGGTTGTAATGAGCACATCGAATTTCTTGAAGATGAGGGAAACCAACCTTTGGAAATAGAGGACATTGATATAGATAACACAAACAGTTTAAATAGCActgaaaaattagaaattataaGGCAATGTCCAATAAGGACTAGTGAGAACAATAATCTTTTCCCCGAAGCAGAAAATGAAGCTGCATCAGAACTTGATTCAAATTGTAGTAACCAAAATGATTAcatgaatgatattgtagaacTAGATGAAGCAGAGGCAGCTGATACAAATAATTTGCAAATTGATAATGGTCAGGAAATTGACGAGGATGACATTTGTATCGATACAACTGAAGATATATATTATGAGGAAGACTCACCAATGAATGATGAAAAATATTGCTCAAATGATGAAATAGCGATTaatgtggaaaataaaaataaaaattcttctgCAGAAGAATCACAAAATATTCAGGAGACGAGTACACCAACATCCAGCAAGTGTCATGAGGAGGAAGCTCAATGTAATGCAGAAATCAATGTTGATGAAAAAGATGAAGTTTCAAATGATGATTTTTCGTTAGAAGAAGAGTATTTAATAGAAGaaataagttGTCCTCAACAATATGATGATATTGATTTGAATGAGTATTTGGGCAAGGTGTTGTTAACAAAATTTCAAGACTTGCAAATAATCTGGGAGACGGAATGCAAAGTATGTCTTTTCAACTATAACGACTTTGATGAGCTATTAAGACATTCGTGTATTACTGAGTTCGCAGAGGAACAACAATTCTGTtgtataatgaaaaattgtgATGACAGTATGCATGATTTACCATCATTTGCCAGACATTTGATACTAAAGCATTATGATAAATTAGAAAGtgTAGCAATTTACGGAAAATGTCCAGATTGCcagaaaacattttcaaatattatagattttaataaacattctTGCTGTCGAACTATAAAACGAAAACCTGGATCACCAAATTATTGCCAATACTGCGATATGGATTTTCAATCCTTAAAAAGATACGTGTTTCATATGCAATTTCATTTGACAAATCGGCGACCCAAAGTGTGCTTATTGTGTggtgatttatttaataattccaATGATTTCTTTGAACACACTCAGTATCAACATATGGCTGAAGGTTCTATGGCCTGCATAAAaTGCGATCGTTTCTTTAAAGACAAGGAAGTATTTGATAGCCATATGGAGTTGCATGAGGATTCAAAGTATCAATATAGTTGCACTGTTTGCCCTAAAAAATACACCAATAAATTCGGCTTAACTCAGCACATGGATATTTATCACAACAACAAAGCCAATATTTCACGATGTGGTGATTGTAATAAGGAATTTGTCACTAAAACATCTTATCGCAATCATATAAAATGTCATGCAACTGATGTTCAAGTGGAATCTTTTGTATGCTCAACATGTGGTATTATAAGTAATGATTTGGAATTTATGAAgAATCACATTGAACAAGATGAAGATTCTCCATGCTTTTCGTCTTCAATAGAAGAGAAAACTTTGGGTGTAAGCTATACATGTGAAAACTGTTCTCTAGACTTTCATACAATTAAGGATCTCAAAAGTCACCGTTTATGTGAAAGTCACAAAGGTGATTTATTCCATTGTAGTATATGCCGTCAAAGTTTCAAAACGCTGCGTCACATGCGCAACCATTCAATTAATCACAAGGATTTCAAAGAACGCCAGAAAGCATTTCCCATAACACGTTTTTATGTCTGCAACATAGGGGATTGTGAAGAGTTCTATCCAATATGGACCTCAttgtattatcataaaaaacgTCCACACAAAACTGCAGAAACTTCGACAACTCCCAGCAAGCTCAAATGTCAATTTTGTCAACAAGTGTGCGTTTCGAAAATGTCCTTGGCCGTACACGTGGCGAGAAGTCATAATAATTCAAACGTTAAATGTTCTCACTGTAAACGAAATTTTAAATCTCAACAGCATTTGCAAGatcatattgatttttttcacaCACCCATAGAATGTGACATGTgctataaaaagtttaaacatcGTCGCAATTTACAGTCGCACAATAAAATGGTGCATCTTAATATTAAGCGCTATTTTTGTAGCTACTGCGATAAAggatattttcataaaagcgAAAGGGATAtacatgaaaaaaaaGTCCATCCCGACATTTCTTATAAATGTGAAGTATGCAACTTTACCACTAATTATCCGGAATCTTTGGAAATTCATATGGACAAGCACAACAACAAGTTGAAATATCGGTGTTCAGTTTGCGGCAAAGCGTTCGGCCGAAAGCAACTTTTGAAATGTCACTTAAAAAGACATCTCAATCAAAAAGAcTATTCTTGTGCTGACTATTTGAATGAAAGCGGTTGTAATGGAACTTTTTTGACTAGTCATTTATTGAAAAAGCATATTCAAAGTAAACATCCAAACTCGAGTTATAACATTAACTTGCAAAGAGacaaacaacataaaaaatcatttaatcaATGTCCAGAATCTGatcaaatagaaaatatttcatatgaaatattaGACGATGACGACAGTAGTAGTACGAGCGAAACGAGTTGTAAATCATCGGATTTAATGCAATTTAATGATACTGAGTTTGTATTGATTTTGGAAAATGAAATGGAAATTGacgaaaagtaa
Protein Sequence: MAVNVSTIGSVCLCCKTNSEVDAGKDFHEIYDEVGLELQLPNLVEKFFHIKVNNGGAKQLCDDCVNQLIDLYDMEEHFKEECKVSHVERPEKTNNKTTDRHTSHETNLQRTTAIEGRNLREADPLTPINSNQQNGTRKVDDPKYGNVENLIDNEGPVSFAFAHNQDDTSGTENFMEEEFIILHENEDSQHFNEITPNSILKVIDLCDSGCNEHIEFLEDEGNQPLEIEDIDIDNTNSLNSTEKLEIIRQCPIRTSENNNLFPEAENEAASELDSNCSNQNDYMNDIVELDEAEAADTNNLQIDNGQEIDEDDICIDTTEDIYYEEDSPMNDEKYCSNDEIAINVENKNKNSSAEESQNIQETSTPTSSKCHEEEAQCNAEINVDEKDEVSNDDFSLEEEYLIEEISCPQQYDDIDLNEYLGKVLLTKFQDLQIIWETECKVCLFNYNDFDELLRHSCITEFAEEQQFCCIMKNCDDSMHDLPSFARHLILKHYDKLESVAIYGKCPDCQKTFSNIIDFNKHSCCRTIKRKPGSPNYCQYCDMDFQSLKRYVFHMQFHLTNRRPKVCLLCGDLFNNSNDFFEHTQYQHMAEGSMACIKCDRFFKDKEVFDSHMELHEDSKYQYSCTVCPKKYTNKFGLTQHMDIYHNNKANISRCGDCNKEFVTKTSYRNHIKCHATDVQVESFVCSTCGIISNDLEFMKNHIEQDEDSPCFSSSIEEKTLGVSYTCENCSLDFHTIKDLKSHRLCESHKGDLFHCSICRQSFKTLRHMRNHSINHKDFKERQKAFPITRFYVCNIGDCEEFYPIWTSLYYHKKRPHKTAETSTTPSKLKCQFCQQVCVSKMSLAVHVARSHNNSNVKCSHCKRNFKSQQHLQDHIDFFHTPIECDMCYKKFKHRRNLQSHNKMVHLNIKRYFCSYCDKGYFHKSERDIHEKKVHPDISYKCEVCNFTTNYPESLEIHMDKHNNKLKYRCSVCGKAFGRKQLLKCHLKRHLNQKDYSCADYLNESGCNGTFLTSHLLKKHIQSKHPNSSYNINLQRDKQHKKSFNQCPESDQIENISYEILDDDDSSSTSETSCKSSDLMQFNDTEFVLILENEMEIDEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399832;
90% Identity: -
80% Identity: -