Nfer003996.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- BCL11B
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:5152905-5160668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00085 0.083 14.4 1.5 1 23 231 254 231 254 0.97 2 18 5.5 5.4e+02 2.4 2.3 1 23 260 283 260 283 0.96 3 18 0.024 2.4 9.8 2.2 2 23 314 335 313 335 0.96 4 18 0.97 95 4.8 1.5 1 23 412 435 412 435 0.96 5 18 0.033 3.2 9.4 2.6 2 23 443 464 442 464 0.97 6 18 0.0077 0.76 11.4 0.2 2 20 524 542 523 545 0.94 7 18 0.0012 0.12 13.9 1.8 1 23 618 641 618 641 0.92 8 18 0.03 2.9 9.5 1.1 1 22 648 669 648 669 0.96 9 18 0.00043 0.042 15.3 1.2 1 23 735 757 735 757 0.97 10 18 0.72 71 5.2 0.1 2 19 784 801 783 804 0.89 11 18 0.0038 0.37 12.3 6.7 1 23 852 875 852 875 0.97 12 18 0.065 6.4 8.4 1.9 1 23 912 935 912 935 0.95 13 18 0.44 43 5.8 1.5 2 23 990 1010 988 1010 0.91 14 18 1.2e-05 0.0012 20.2 1.0 1 23 1016 1038 1016 1038 0.98 15 18 5.3e-05 0.0052 18.2 3.3 1 23 1044 1067 1044 1067 0.98 16 18 0.0043 0.42 12.2 4.7 1 21 1073 1093 1073 1095 0.96 17 18 0.00095 0.094 14.2 0.3 3 23 1132 1152 1131 1152 0.99 18 18 0.0003 0.029 15.8 1.3 1 20 1158 1177 1158 1179 0.95
Sequence Information
- Coding Sequence
- ATGTCGCAGCTATATCACCCTCAATATTCCTTGCTTAAAATTATGATGAACGAATGTTTTATAAATGGGGTGCAGTATAAATGTCGTACTTGCTTTGATCCAGGAGCAACAGTATATGCTCTTTCAGAGGAGTGCAGCAGCTCCAAAACTTGGCGAGAtttattgaatgatattgtTAAGTTAAAGACAAACGACGACGAGTTACTTCCAAAGACTATTTGTTCGAAATGTTTGGAGAAACTTGCCAGTTACTACGATTTTATacttaaaattcaaaatgtaaCTGAAAAGTACCACCAGCTTTTGGCAACTGGCAAACATTCTTCACAAAATGATAGTCTTGCTAGCAGCTCTAAAAATACAGCAGAATTCTTGGAAGTATCTGCCACTGTCTTGCCTTTGGGTCAGTGTGTTCCGGAAATTAAGTTTGAAGACGTGCTCCTTATGCCTTACGATATTGTTTTGAATAAAGACAATAGAGGAAGAGATGCTGTAAAAGAAGATACTTGTGATCCTTTTATGGAAACTTTGGAAGAGGATATTAAGCACGCTTTAGATACTTTGAAATACGAACAAAGGTCTTCATCCTCCAGTGCAAGTGAACATGACCTGCTTACTAGtCAGCCAATCGAAAAGAGAACTGAAGAGCAATTCCGCAAACACTTTCCAATCCAAAATTTCAACAATCATTTCGTGTGTGGGAtatgcaagaaattattttcGTCGCCGTCAAGTTGTCGCAGACATATAATCACAATGCACTACCAAGGTAAATCGTACATATGTGCATTTTGCGATCAACATGCGCAAGGTAAAAATCACTTAATTGGACATCTTAAACGTAAACATCCAGACGAATCATATGAATCCAATGCGAAACTATTAGGTCGTTTGCTTGGGGAACGTTTGTATAGCAAACCTCTTCTATTACCACGAGTAGAATGTAAGCTGTGTTGTACTACTTTTGTAACTAAAAAACAACTTATTCAGCATCTAGAGAGCCATAGTGAAGCCAGTACTCTTCACAGTTTACAATTAAGCAGTGATATTATTCAGCGTTGGTTtccaaagaagaaaaatttgcaagtcATAAAAACCATGATATGTAAAGACATTCGAGAAAAAAACTGGATCAaatattatacaattttaaatgatttttcctatgAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAAAAGTACCTGCCAACAAATATAAATGCGAATTGTGTGCGAAAGATTATTTGTACAAACATCAAGTGTTTGCTCATTTGAGAGAGGATCATTTGAACGAAGACATTCCTTTGAAATGCAGCCATTGCAATCTGGAATTTATatcaataaaaatgtatgaacaaCATAAACAAACCCACTGCCTGTCTAAACATAAACTATTGCTTTGTCCCAATTGCAATGGCAAGTTTGTCTGGCTCGTAAATATGAAAAACCACAATTGTGTTACGAAAATGTTGGATATTGTAAAAGCTCGGAATGTTAAAACAAGTGAGAGTTGCAATGATGAAATGCgttcatcgccaaaaactatCATAAGATGTGGCCTTTGTGACATGACCTTTGAAAAACTGCGCGATTTACGACAACACATGCCCTTGCACGCCGATGGCAAAACTGGAGTTGACTTTAATGGTTGCATTTATGTAAACCAATTTGAAAATGTATCCAGCTGTCGCGAATTGTTGGAACAGAAGATTAAAAATGCCTTCACGAAACGTCAAATAAGTAAACTGTATCAAGCCATCGATAAATATGGCAAAGAAGTGGACATTTCAGATTCGGATAGCGATGAAGGTGATGCTGATGGCAAAAAATGTTATTTGTGTGAACTTTGCAATGAAACGTTTAAAAAACGTACACTTCTGTTTAAACATCAAAGTGAACAACACGGGGATGTTTCGATGCCTTTCACTTGCATGGAATGTAAGATGCAATATGTTAGTATTCATTTGTTACAACAACATATGAAGAGAGAATGTTGGAATGAGCATCGACGAGTAGCCAAACAATGTGATTGTTGTAAAGCGCGTTTTATATGGCCGGATAACATGTTAAAACATAAAGAAATACAGcgatacataaatattaaaaattcactcTCTGAGACAAAGAAAACAATTGCTTCATCCAACTTAAGTTGTGAAGTGACAAGTGCCAgtatcaaaacttttttttgtttcttatgtccaaaaattttctataacacTGACCAGCTCAATGACCATTTGATGCGTCATCGTCTCACTCCATCCACCATCAAAACTGTTGTAACCACAATACATTCTACATGGTGGCCAAACGGCAGAAAgctaataaaatgcaaaatatgtgAACAAGTATTTTTAAGTACGGCCGAACTAAATGAAcatttttcttccaaaaatCCTAAAAATGTGTGTGGTGGAGGGCAACATTCAGTGGCAAATTACTCGATTACAAATCAAATGGGGTTTGAGTTACATTTAGAGCTGGACTCAGAAACGGAAACTGAAAACAtcgaaaatgaaaatatattgccATATAAATGTTGCATGTGTAGTAAATCATTCAagcgaaaatttcaaataactcAGCATCAAACATCGATGCATAACTATGAATTGTTGGAACTCAAATGCGAACGTTGCTTTTTTAGAACTGTATCACAGaaagttttaGATTATCATAAAGTAAGCCAGTGTTTTAATGTTGAGAAAATGCACCAATGCGATCAGTGTAATTTCAAATTTATGTGGCAAGAAAACCTTGAAAAGCATGTTTCGATATTTCATACTTCGGACGTTTTCGTCAAAGCACTGCATGCGGCTAGCACAATGAGCAATACTAATGCTCAATGCCTTGAATCAGAAGAAGCTTCCCAGAATGATTTGTCGTTATCATTACATCAAAACGATTCAGATGCAAGGGACTGCATTCAATCTAAAGATAAATGTAAATGTCTCATTTGTGGAATTTACATTACCAAAAATAATTATGCAGAACATATTAGGAGAcacaaatgtgacaaatcttacAAATGCGATTTTTGCGAAATGGCCTTTATAACCAATTCGTCATTAAAGAAACATCAGGACATGCATACGGGAGAACGTACTTTCACATGTACCTTTTGCTGGAAATCGTTCAAGAGGCGGAGTGTTCTACGTGTCCATAAACGACGATTACACAGCGAAAAACTACCATACAGTTGCACAACTTGTTCGAAATCATTTCTACAATCGGCACATCTGACTGCTCATATGAGATGTCATTCGGGTGAAAAGCTAAAAAGACAAAACTTATTATTGTCGACGCCAGATAAGAAGCCGGACTCAACTGGTTCTACCCAACATGCACAAGAAGGGAGAAGGACAAACTTATGTCCAATTTGTGGTGTCTATCTGTCACACAAAACAAGTCTTGCAATACATATTAGAAGCCATACGGGCGAAAAGCCATTCAAGTGCGATCTTTGTGATAAAAGCTTTATAAAATCAATGCATTTAAATCTGCACACACTTTACTGA
- Protein Sequence
- MSQLYHPQYSLLKIMMNECFINGVQYKCRTCFDPGATVYALSEECSSSKTWRDLLNDIVKLKTNDDELLPKTICSKCLEKLASYYDFILKIQNVTEKYHQLLATGKHSSQNDSLASSSKNTAEFLEVSATVLPLGQCVPEIKFEDVLLMPYDIVLNKDNRGRDAVKEDTCDPFMETLEEDIKHALDTLKYEQRSSSSSASEHDLLTSQPIEKRTEEQFRKHFPIQNFNNHFVCGICKKLFSSPSSCRRHIITMHYQGKSYICAFCDQHAQGKNHLIGHLKRKHPDESYESNAKLLGRLLGERLYSKPLLLPRVECKLCCTTFVTKKQLIQHLESHSEASTLHSLQLSSDIIQRWFPKKKNLQVIKTMICKDIREKNWIKYYTILNDFSYEISISDTDAEDLEEETKVPANKYKCELCAKDYLYKHQVFAHLREDHLNEDIPLKCSHCNLEFISIKMYEQHKQTHCLSKHKLLLCPNCNGKFVWLVNMKNHNCVTKMLDIVKARNVKTSESCNDEMRSSPKTIIRCGLCDMTFEKLRDLRQHMPLHADGKTGVDFNGCIYVNQFENVSSCRELLEQKIKNAFTKRQISKLYQAIDKYGKEVDISDSDSDEGDADGKKCYLCELCNETFKKRTLLFKHQSEQHGDVSMPFTCMECKMQYVSIHLLQQHMKRECWNEHRRVAKQCDCCKARFIWPDNMLKHKEIQRYINIKNSLSETKKTIASSNLSCEVTSASIKTFFCFLCPKIFYNTDQLNDHLMRHRLTPSTIKTVVTTIHSTWWPNGRKLIKCKICEQVFLSTAELNEHFSSKNPKNVCGGGQHSVANYSITNQMGFELHLELDSETETENIENENILPYKCCMCSKSFKRKFQITQHQTSMHNYELLELKCERCFFRTVSQKVLDYHKVSQCFNVEKMHQCDQCNFKFMWQENLEKHVSIFHTSDVFVKALHAASTMSNTNAQCLESEEASQNDLSLSLHQNDSDARDCIQSKDKCKCLICGIYITKNNYAEHIRRHKCDKSYKCDFCEMAFITNSSLKKHQDMHTGERTFTCTFCWKSFKRRSVLRVHKRRLHSEKLPYSCTTCSKSFLQSAHLTAHMRCHSGEKLKRQNLLLSTPDKKPDSTGSTQHAQEGRRTNLCPICGVYLSHKTSLAIHIRSHTGEKPFKCDLCDKSFIKSMHLNLHTLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074740;
- 90% Identity
- -
- 80% Identity
- -