Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000394.1:800883-806646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0015 0.15 13.6 0.5 1 23 350 373 350 373 0.95

2 12 1.3e-05 0.0012 20.1 2.2 1 23 378 401 378 401 0.96

3 12 2.6e-05 0.0026 19.1 4.5 1 23 406 428 406 428 0.97

4 12 0.073 7.1 8.3 5.2 2 23 435 456 434 456 0.95

5 12 0.0016 0.16 13.5 2.8 2 23 464 486 464 486 0.95

6 12 0.023 2.3 9.9 1.1 1 23 492 515 492 515 0.95

7 12 0.013 1.3 10.6 0.8 2 23 526 548 525 548 0.94

8 12 3.5e-06 0.00034 21.9 0.6 1 20 576 595 576 598 0.93

9 12 7.2e-06 0.0007 20.9 2.3 1 23 605 627 605 627 0.96

10 12 0.00024 0.024 16.1 0.2 3 23 635 655 634 655 0.97

11 12 0.012 1.2 10.8 1.2 1 23 662 684 662 684 0.98

12 12 0.00033 0.032 15.7 3.3 1 23 690 713 690 713 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0015	0.15	13.6	0.5	1	23	350	373	350	373	0.95
2	12	1.3e-05	0.0012	20.1	2.2	1	23	378	401	378	401	0.96
3	12	2.6e-05	0.0026	19.1	4.5	1	23	406	428	406	428	0.97
4	12	0.073	7.1	8.3	5.2	2	23	435	456	434	456	0.95
5	12	0.0016	0.16	13.5	2.8	2	23	464	486	464	486	0.95
6	12	0.023	2.3	9.9	1.1	1	23	492	515	492	515	0.95
7	12	0.013	1.3	10.6	0.8	2	23	526	548	525	548	0.94
8	12	3.5e-06	0.00034	21.9	0.6	1	20	576	595	576	598	0.93
9	12	7.2e-06	0.0007	20.9	2.3	1	23	605	627	605	627	0.96
10	12	0.00024	0.024	16.1	0.2	3	23	635	655	634	655	0.97
11	12	0.012	1.2	10.8	1.2	1	23	662	684	662	684	0.98
12	12	0.00033	0.032	15.7	3.3	1	23	690	713	690	713	0.98

Sequence Information

Coding Sequence: atggaAACTTGTCGTACTTGTGCCAAATGTGATTTTGATAATGAAAGCCAAtggtttgatttatttaatgctCCTCGTTGGCAACTTGAAACGGAACGCATACATTTGGAGTTAAATTTTTGGAAGATaaagATTTCGTGCAACGATGGTTTGCCCCAAAAAATTTGCCCCgattgtttttcaaaattttgcacagtctCCTCATTTCGTTTACAATGTTTGGAGGCACAAACAATTTTAAGCAATATTTTCGATAAAATCGATACACAAAGTatacaagaagaagaagaacaagaAGAAGTTTTCGAGAGTTTTGCTAATGAACATGATAATGATGCACAAAATGCCGTAACAACTATAACTAACGCTGCtgctgcagcagcagcagcagcagatgAAACAACAGCGACCGCGGCAGTAGcagaaataataacaattgCGCACACATTTGAGACAACAATTGTAAAGAGCACAGCTGGCAgtaataatatcagcaataacaacaataatattaacAATAACGAGAGTTTTAGtgaaatcttaaatttaaatcatGAATACAATACGGAGGTTTCATTTCGAAATACAAACATCACAAACTTATCAGACACTGCCTgtttaaaaaacgaaaataaaagcCATAATTTTAATAGCATCTTTGAAAAATTAGACGATATTAATAATGACACTGCTAATGAAGATGCAACCGCCAATAATGtaactaatttaaataataatggaACAACACTACCACATGATACCAACGATTTAGATGAAAATGACATTATAGAAGAACTCATCGAAGAACTAGACATCATTGAAGAAATTAATGAGGAAGAAGAGAATGAATGTAATGGCGAACATCTAGCAAATGGAAATATATTGTCCCAATCAATTGACAACGAAGATGATAACTTAAACGAAGATTTAGGAATAACATTCGAGTGTAAATACTGTTACAAGTGGAAGAATAGCGCCTCCGAAAACTTTCTGACGCAACAGGAGTTGTTGACTCATATCACTAAACTACACAACTCGGAACAGCCATATAATTGTCCTTATTGCAAGCAAACGTTTATGGATGCCGCTTCAAGGACAACACACTTAAAGGAAGAGCATAGTCAAAAAGTGCATGAGTGTGAAACATGTGGTAAAAAATACGCCgataaatttaacttaaaaaatcacATCGAAAAATATCACAGTGGCACCGATTTCGATTGTACGCTGTGTGATAAGAGTTTTTGTTCGCGAAAGAGTTTGAATTATCACATGAAATGGCACAATCCGAAGGAACAATTAAAATGCAGCTACTGTGATCGTTTGTTTATCAATCAAAGGCATTTGAAGTGCCACGAGGAAACACACACTGGATTTCGTAGTCAGGAGGTGTGTTCGTTTTGTGGaaaaaATTTCTTCCATTTGAAAACTCTTAGATGGCATATTTACCGTCAACATGGTGGCGAGAAACCATATAAATGTGCCAGGTGTACGGAAGttTTCACATCATATTTTGCAAAACGTATACACATGCTTGAATTTCATTTGGATAATTTAACGCTCATCGAAAAGACCGAATGCATGCTGTGTCACAAACGTTACGACAATGAATTGGAACTTAAGGATCATATGCTAGAAGATCACAAGGAAAATAAAGGAGCTGTAAAAATAGCCAATAATAAAAGAGTAATTAtgaacaaaaaaccaaaaagctTTACAGGAATATTTCAATGTGAAAAATGTGATAAAAGATTTAATATGAAATCAGCTTTAGAGAGACACATGCCTGTCCATTCCACGGAGGGAAGACCTCATGCCTGTCCTCAATGTCCTAAACGCTTTAAACGTTCGCAAGATATGAAATGGCATTTAAAAACGCACTCCTCAGAGAAACCGAATATCTGTGATGTTTGTGGCAAAGGATTTGCTTTAAAGTATGTGTTAACTCAGCATCGTAGAAGTCACGAAGttttagaaaAGAACTTTACTTGTTCCACCTGTGGTCGCTCATATCTCTTTGAAAAATCTTTGCGTTTGCACGAACGCATACACAGTGGTAAAACCTATTACAAATGCGATTTATGCAGTGAAAGTTTTGTTAcacacattaaatttaaatggcatatgaaaaaaatgcaCGACGAAGAAGAAGTCGCCGCCACAAATTTTAAtcctaataaaattaaatctaaCATTGAGCTGCCATTGGACGATTTGGTCAATATTGTGATTACTTAG
Protein Sequence: METCRTCAKCDFDNESQWFDLFNAPRWQLETERIHLELNFWKIKISCNDGLPQKICPDCFSKFCTVSSFRLQCLEAQTILSNIFDKIDTQSIQEEEEQEEVFESFANEHDNDAQNAVTTITNAAAAAAAAADETTATAAVAEIITIAHTFETTIVKSTAGSNNISNNNNNINNNESFSEILNLNHEYNTEVSFRNTNITNLSDTACLKNENKSHNFNSIFEKLDDINNDTANEDATANNVTNLNNNGTTLPHDTNDLDENDIIEELIEELDIIEEINEEEENECNGEHLANGNILSQSIDNEDDNLNEDLGITFECKYCYKWKNSASENFLTQQELLTHITKLHNSEQPYNCPYCKQTFMDAASRTTHLKEEHSQKVHECETCGKKYADKFNLKNHIEKYHSGTDFDCTLCDKSFCSRKSLNYHMKWHNPKEQLKCSYCDRLFINQRHLKCHEETHTGFRSQEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFAKRIHMLEFHLDNLTLIEKTECMLCHKRYDNELELKDHMLEDHKENKGAVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMPVHSTEGRPHACPQCPKRFKRSQDMKWHLKTHSSEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCSTCGRSYLFEKSLRLHERIHSGKTYYKCDLCSESFVTHIKFKWHMKKMHDEEEVAATNFNPNKIKSNIELPLDDLVNIVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00435833;
90% Identity: iTF_01399786;
80% Identity: -