Nfer003982.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:5043906-5053274[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 2.6 9.7 1.2 2 23 228 250 227 250 0.94 2 18 0.00057 0.056 14.9 0.8 2 23 281 302 281 302 0.96 3 18 0.0077 0.75 11.4 2.4 1 23 379 402 379 402 0.97 4 18 2 2e+02 3.7 1.4 3 23 411 431 409 431 0.91 5 18 0.069 6.8 8.4 0.2 2 20 491 509 490 512 0.94 6 18 0.014 1.4 10.5 3.8 1 23 585 608 585 608 0.94 7 18 0.006 0.59 11.7 0.3 1 22 615 636 615 636 0.96 8 18 0.0038 0.37 12.3 7.5 2 23 691 712 690 712 0.95 9 18 0.0098 0.96 11.0 0.1 2 20 739 757 738 759 0.93 10 18 0.00017 0.017 16.5 5.5 1 23 805 828 805 828 0.98 11 18 0.0086 0.84 11.2 0.7 1 23 865 888 865 888 0.97 12 18 4.2 4.1e+02 2.8 0.2 2 23 948 968 947 968 0.90 13 18 0.018 1.8 10.2 4.6 1 23 974 997 974 997 0.98 14 18 4.7 4.6e+02 2.6 0.1 5 23 1036 1054 1035 1054 0.86 15 18 2.2e-05 0.0022 19.4 1.3 1 23 1060 1082 1060 1082 0.99 16 18 0.00021 0.021 16.3 3.2 1 23 1088 1110 1088 1110 0.99 17 18 0.0062 0.61 11.7 5.1 1 23 1116 1138 1116 1138 0.97 18 18 0.00011 0.01 17.2 0.9 1 22 1144 1165 1144 1168 0.90
Sequence Information
- Coding Sequence
- aTGATGaagaaatgttttattaatGGAGTGCAGTATAAATGTCGTACTTGCTTTGATCCTGCAACAACAGTATATGCTCTCTCAGGGGAGTGCAGCAACTCCAGGACTGGTCAAGATCTATTGAATGATATTGTTAAGTTAAAGATAAACGATGACGAGTTACTTCCAAAGACGATTTGTTCGAAATGTTTGGACAAACTTATCTGTTGTTACGATTTTAAACTTCATATTCAAAATGTGAATGAAAAGTACCAGCAACTTTTGGCAAGAGGTACACATTCTTCAGAAAATAATAGTCTTGCCAGCAGCTCCAAGAATATTACAGAATGCTTGGCAGAATCTACCACTGCCTTACCCTTGGATCGGTGTGTTTTGGAAATAGAGTTTGAAGACGAACACCTTATGTCttacgatattttttttaataactacgATAGAAGCAGCGATTCGGGCAAAGAagATACTTGTGATTCTTTAATGGAAACATTGAATGAGGATCTTGAACTCGACTTAGATAAGTTGCAAAGCCAACAAagATCCCTAAAAGAAGAAATAACTCAAGCTCTTGAAGATGCTCTTAATGATTATTATTCCGAAAGCAGgtCCTCATCCTCCAGGAAGAGTGAACATGACATGCCCAATGGGCATATAATTGCAACACATTACGAAGAAAGATCGTTATCATGCGCATTTTGCGGCATAAATGTGAGACATAAGCACACCttaatttcacatattaaagctATACATCCAGGCGAGTCACATGATTCCAATAAAAAGCAATTAGGTCGTTTATTTGGAGAACGTCTGTATAGCAAACCTCTTATATTACCACTAGCGGAATGTAAACTGTGTGGTTCTACTTTTACGAGTAAAAAAACACTTCTTCAGCACCTAGATATTCATAGTGAGGTCAATACTCTTCACAACTTAAATTTAAGCAGTGATGTTATTCAGCGTTGGTTTCCAAATATGAGGGCTTTGGCAGTCATAAAAACAATGATATGTGAAGATATTCGAGAGAAGAACTTTGTCAaatattacacaattttaaatgacTTTTCCTATGAAATGTCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAAAAACAGAAGTGTCTGCCAACAAATATAAATGCGAATTgtgtgaaaaagattttttgcacaaatatcAAGTGTTTGCTCATATGAGAGAGAATCatttaaacgaaaaaattccTTTGAAATGTATCCGTTGCAAGTTGGAATTTATATCTACAAAAATGTACGAACAACACAGACAAACTCACTGTCGACATGAACATAAAATACTGATTTGTCCCAATTGTCCTGGCAAGTTTGTTTGGctcgaaaatatgaaaaaacacAATTGTGCTACGAATATAgtaagttttgaaaaatatgtaaaagataAAATTAATGCAAAGTATAACGAAGTAATCCGTTCATCTCCAAAAACTATCATAAGATGTGGTCTTTGTGAAATCACCTTTCAAAAATTGCGCGATTTACGGCAACACATGCCTTTGCACGCCGATGGTAAAACTGGAGTTGACTTTGATGGTTGTATTTATGTAAATCAGTTTGAAAATTTATCCAGAAATCGCGAATTGTTGCAAAACAagattaaaaatgcatttgcgAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAGATGATGCTGATGGTGAAGAAAGCTATTTGTGCGAACTCTGCTATGAAACGTTTAAAAAGCGGAAACTTCTGTTTAATCATCAAAAACATGCACACAATGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGACTTGTTACAACAACATATAAAGCGGGAATGTTGGAATGAACATCGACAAGTTGGTCAACAATGCGATTGTTGTGAAGAGTTTTTTATATGGCCGGAAAACATATTGCGACATAAAGAAATACagcgATACATAAGTATCAAAAATTCGCTGTCTCTGAACTTGTGTCGTGACAATATCCAAATTTGCTCTTGTTTTTTATGTCCTAAAACTTTCTGTAATACTGACCATTTAAATGATCATTTGATGCGCCATCGGTTAACACCATCCATCATCAAAACCGTTGCAAGCACAATACATTCCTTATGGTGGCCAAATGGCAGAAAgataataaaatgcaaaatatgtaaTCAAGAATTTTCAAGTATTGCCAAATTAAATGAACACTACTCTCTAAAAAATCTGAAGAACGTGTGTGGTGCCATGCAACATTCTCTGTCAAATTACTCGGTTACTAATCAAATGGGGTTTGAATTACATTTAGAGCTGGATTCAGAAACAGAAActgaagaaaatgaaaatatattgccATATACATGTTGCATATGTAGTAAATCATTTAAGCGAAAGTTTCAAATAACTCAACATCAAAGATCCGTGCACAATTATGAATTATTGGAACTCAAATGTGAACGTTGTTTTTTTAGAACCGTATCACAGAAAGTTTTAGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTGTAATTTCAAATTTATGTGGCAAGAGAACCTCGAACAGCATATTTCGATATTTCATAATTCAAACGTTTTCTTCAAAACATTGGATGCAGCCAACACGTCGTTTTTAAATGACGCAAGCAATATAAATCCTCAGTtccttcatttaaaaaaaaattcacagagTGATTTGTCATTAGCATTACATCAAAACTATTCAGATGCAGGGGAGTGCATTCAATCTAAAGATACAATACAATGTCTAATTTGTGGAACTTACATTAACAAAAATGATTATTCAGGACATATTAAGAGAcacaaatgtgacaaatcttacAAATGCACTTTTTGCGAATTGGTTTTTTTAACACATGACTCTTTAAGGAAGCATAAGCGCAGGAGCCATAAACTTCATTCGGGTGAAAGTCCAAAAggacaaattaatttattatcgaCGTTAGAAAATAATTTGGACTCAACTGTTTCTAATCAACATCCACAAGGTACGAGAAAATTCAAATTATGTCCAATTTGTGGTGTCTATAGAAgaaatattgaaatacatataaGAAGCCACATGCAAGAGACGCCATTCAAGTGCGAGCAATGTGACAAAATCTATAGCaccgaaattaatttatatttgcatcGGCGCACACACTCTAGTAAACGTCCTTTTAAATGTACACTTTGTGAGAAAGACTTTATCCATGAATTCAGATTAAAAGCTCACATGCGCTCTCACACTGGCGAGCGTCCATACGAGTGCACTGTTTGTCAGAAAAAATATATCCATTTTTCCACTTTGAAGCATCATTCACTTATTCATACTGGCAAGAAATCCTTTATATGTGAGATTTGCAATCGCGGCTTTAAATCTTCCTGGTATCTCAAAAGACATCGTGACAGAAAGGGCCATCATTcagaaaataattga
- Protein Sequence
- MMKKCFINGVQYKCRTCFDPATTVYALSGECSNSRTGQDLLNDIVKLKINDDELLPKTICSKCLDKLICCYDFKLHIQNVNEKYQQLLARGTHSSENNSLASSSKNITECLAESTTALPLDRCVLEIEFEDEHLMSYDIFFNNYDRSSDSGKEDTCDSLMETLNEDLELDLDKLQSQQRSLKEEITQALEDALNDYYSESRSSSSRKSEHDMPNGHIIATHYEERSLSCAFCGINVRHKHTLISHIKAIHPGESHDSNKKQLGRLFGERLYSKPLILPLAECKLCGSTFTSKKTLLQHLDIHSEVNTLHNLNLSSDVIQRWFPNMRALAVIKTMICEDIREKNFVKYYTILNDFSYEMSISDTDAEDLEEKTEVSANKYKCELCEKDFLHKYQVFAHMRENHLNEKIPLKCIRCKLEFISTKMYEQHRQTHCRHEHKILICPNCPGKFVWLENMKKHNCATNIVSFEKYVKDKINAKYNEVIRSSPKTIIRCGLCEITFQKLRDLRQHMPLHADGKTGVDFDGCIYVNQFENLSRNRELLQNKIKNAFAKRQISQLYQAIDKDGKEMDISDSDSDEDDADGEESYLCELCYETFKKRKLLFNHQKHAHNDVSMPFTCKECKMQYVSIDLLQQHIKRECWNEHRQVGQQCDCCEEFFIWPENILRHKEIQRYISIKNSLSLNLCRDNIQICSCFLCPKTFCNTDHLNDHLMRHRLTPSIIKTVASTIHSLWWPNGRKIIKCKICNQEFSSIAKLNEHYSLKNLKNVCGAMQHSLSNYSVTNQMGFELHLELDSETETEENENILPYTCCICSKSFKRKFQITQHQRSVHNYELLELKCERCFFRTVSQKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQENLEQHISIFHNSNVFFKTLDAANTSFLNDASNINPQFLHLKKNSQSDLSLALHQNYSDAGECIQSKDTIQCLICGTYINKNDYSGHIKRHKCDKSYKCTFCELVFLTHDSLRKHKRRSHKLHSGESPKGQINLLSTLENNLDSTVSNQHPQGTRKFKLCPICGVYRRNIEIHIRSHMQETPFKCEQCDKIYSTEINLYLHRRTHSSKRPFKCTLCEKDFIHEFRLKAHMRSHTGERPYECTVCQKKYIHFSTLKHHSLIHTGKKSFICEICNRGFKSSWYLKRHRDRKGHHSENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01398800;
- 90% Identity
- -
- 80% Identity
- -