Nfer003973.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:4990434-4997114[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.01 1 11.0 3.5 1 23 230 253 230 253 0.97 2 19 4.5e-05 0.0044 18.4 1.1 1 23 259 282 259 282 0.98 3 19 0.0012 0.12 13.9 1.3 2 23 313 334 313 334 0.95 4 19 0.38 37 6.1 1.7 1 23 411 434 411 434 0.96 5 19 1.8 1.7e+02 3.9 0.8 2 23 442 463 441 463 0.94 6 19 0.028 2.8 9.6 0.2 2 20 523 541 522 544 0.94 7 19 0.033 3.3 9.4 2.9 1 23 617 640 617 640 0.94 8 19 0.0029 0.28 12.7 0.5 1 22 647 668 647 668 0.96 9 19 0.00057 0.056 14.9 1.0 2 23 723 744 722 744 0.96 10 19 0.014 1.4 10.6 0.1 2 19 771 788 770 791 0.93 11 19 0.00017 0.017 16.5 3.6 1 23 837 860 837 860 0.98 12 19 0.0077 0.76 11.4 0.7 1 23 897 920 897 920 0.97 13 19 0.0044 0.44 12.1 1.4 1 23 1000 1023 1000 1023 0.96 14 19 9.7e-05 0.0095 17.3 4.2 1 23 1033 1055 1033 1055 0.99 15 19 2 2e+02 3.7 0.2 5 23 1076 1094 1075 1094 0.87 16 19 5e-05 0.0049 18.2 0.8 1 23 1100 1122 1100 1122 0.99 17 19 1.5e-05 0.0014 19.9 2.8 1 23 1128 1150 1128 1150 0.99 18 19 4.1e-05 0.004 18.5 1.5 1 23 1156 1178 1156 1178 0.96 19 19 0.00026 0.026 16.0 1.8 1 22 1184 1205 1184 1208 0.91
Sequence Information
- Coding Sequence
- ATGGTAAAGATTATGACGAATGAATGCTTTATTAATGGATTGCAGTATAAATGTCGTACTTGCTTCGATCCTGCAACAACAGTATATCCTCTTGCTGACGGGTGCAGCAACTCCAGGACTTGGAAAGATTTACTGAATGATATTGTTCACTTAAAGataaacgAAGCCGACTTACTTCCAAAGACCATTTGTTCGAAATGTTTGGACAAACTTATCAGTAGCTACGATTTTATACTTCATATTCAAAATGTGAATGAAAAGTACCATCAACTCTTGGAaagtgccaaaaattattttcaaaatgataATATTGCCAGCAGCTCTAAGAATATTACAAAATGCTTGGTAGAATCTGCCACTGCCTTGGCTTTGGATCGGTGTGTTTCGGAAATTAAGTGTGAAGACGAACACCTTATGTCTTacgatattgttttaaataactaCGATAGAAGAAACGATTCGGTCAAAGAAGAAGatACTTTTGATCCTTATATGGAACATTTGAAAGAGTATATTGAGCTCTCTTCAGATAACTTGCAATACCAACAaagatcccCAAATGAAGAAATAATAGAAGTACTTGGAGATGATGTTAACGATTCTGATTCCGAAAACAGTCAGCGATTCGATAAAAAGAAGAATAGCGGAGATAGAATTGATGAACAAATTGAAAAAGTCCACGGTAATTTTGTATGTGCGGAGTGCAAAAAATCATTTACTATGCAGAAATTATGTCGCAGGCATATACTTATGAAGCACAGACAAAAGCAATTGTTCCAATGCCAATTTTGCGACGGCATTTTTAAACATAAAGCCAATTTAATTGCACATATTAAACGAGTACATCCTGGGGAGTCATTTGAATCCAATACAAATCAATTAGTTCTTTTGTTTGGAGAACGTTTGTATAGTAAACCTCTGCTATTACCACGAGCGGAATGTAAGCTGTGTGGTTCTACTTTTACGAGTAAAAAAACACTTCTTCAGCACTTAGATAACCATAGTGAGGCCAGTGCTCTTCACAGCTTAAAATTAAGTAGTGATGTTATTCAGCGTTGGTTTCCAAATATGAAGGATTTGCAAGTCATAAAAACCATGATATGTAAAGacattcgagaaaaaaattgggtcaaatattacacaattttaaatgacTTTTCCTATGAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAGAATCAGAAGTATCTGCCAACAAATATAAATGCGAATTGTGTGCAAAAGAGTTTTTGTTCAAATATCAAGTGTTTTCTCATTTGAGAGAGTATCATTTGAACGAAGACATTCCATTGAAATGCAGCAATTGCAATCTGGAAtttatatcaataaaaatatatgaacagCACAAACAAACTCACTGTCGACATGAACACAAACTACTGAATTGCCAAAATTGCAATGGCATGTTTATCTGGctcgaaaatatgcaaaaacacaaTTGTGTTACGAAAATATTAGATATTGAAAAATTTCTGAAAGATAAAATTAGTGTAAAGTATAAAGAAGTAATCCGTTCGTCGCCAGTAACTATCATAAGATGTGGTCTTTGTGAAATGACATTTGAAAAACTGCGCGATTTACGACAACACATGCCTTTACACGCCGATGGCAAAACTGGAGTTGACTTTGATGgttgtttttatgtaaatcaaTTTGAAAGTGTATCCACCAATCGCGAATTGTTGGAACAGAAGATTAAAAATGCCTTTACGAAACGTCAAATAAGTCAACTTTATCAAGCTATCGATAAGAACGGCAAAGAAATGGACATTTCAGATTCGGATACCGATGAAGATGATGCTGTTGGTGGAAAAAGTTATTTGTGTGAACTCTGCTATGAAACGTTTAAAAAGCGAAAACGGTTATTTAATCATCAAAAAGAACAACACAAAGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGATTTGTTACAACAACATATGAAAAGAGAATGTTGGAATGAACATCGACGAGCAGCTGAACAATGTGATTGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATATTGAGACATAAAGAAATACAGCGATACATACGTACCAAAAATTCGCTGTCTATGAACTTGTGTCGTGACAATATCCAAATTTGCTATTGTTTCTTATGTcctaaaaatttcgcaaatgcTGAACTTTTAAATGATCATTTGATGCGCCATCGGTTAACACCATCCACCATCAAAACTGTTGCAAGCACAATACATTCCTTATGGTGGCCAAATGGCAGAAAgataataaaatgcaaaatatgtgACCAAGAATTTTCAAGTATTGCCAAATTAAATGAACACTTCTCTctaaaaaatcctaaaaacTTGTGTGGCGCCAAGCAACATTATCTGGCAAATTACTCTATTACTAACCAAATGGGGTTTGAATTGCACTTAGAGCTGGATTCAGAAACAGAAActgaagaaaatgaaaatatattgccATATAGATGTTTCATATGCAGTAAATCATATAAACGAAAGTTTCAAATAACTCAACATCAAAGATCCGTGCATAATTATGAAATGTTGGAATTTAGATGTGAACGTTGTGTTTTCAGAACTGTATCACAGAAAGTTTTAGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTGTAATTTCAAATTTATGTGGCAAGAGAACCTTGAAAATCATATTTCGATATTTCATAATTCAAACGTTTTCTTCAAAACATTGGATTTAGCTAACACGACGTTTACAAATGCTCAATGCCTTCAATTAAAAGAAGCTTCCCAGaatgatttttcattagcattacATCAAAACCATTCGAATGCACGGGAGTGTATTCAATCTAAagataaatttcaatgtataaTTTGTGGAATTTATATTATCAAAAATGATTATTCAGAACATATTAGGAGACACAAATATGACAAAGCTTACAATTGTACTCTTTGCGAAATGGTTTTTATAAAACGTTTCAGTTTACTGAAGCATAGGAGCATGACCCATACGATTTTATACACCGACGAGCGACCATACAGATGCacaatttgtttgaaattcTATAGAAAATCGGGACATCTGGTCACTCATATGCGACGTCATACAGATGGAAAGCTAAAAACTCAAAACAATTTATCGACGCCAgacaagaaaaaattcaaagtatGTCCAATTTGTGGTGTCCATAGAGCAAATATTGAAATGCATATTAGAAGCCACATGGAGGATACGCCATTCAAGTGCGATCTATGTGGTAAAAGCTTTGGCAGCGAAGTTAGGTTATATGTGCATCGGCGCACTCACTTTAGTAAACGTTCTTTTAAATGTAAACTTTGCGAGAAAGCCTATGTCCATAAATACCTGTTAGAAATGCACATGCGCTCGCACACTGGCGAGCGTCCATACGAGTGCACTGTTTGtcagaaaaaatttatcaattcgCGAAATTTGCAGCAGCATTCGCTTAATCATACTGGTAATAAATCTTTTAGATGTGAGGTTTGCAATAAAGCCTTTCATCGTGCCACATACCTCAAGCAGCATCGTATCAGAATGGGCCATCATTCAGAAAATAATTGA
- Protein Sequence
- MVKIMTNECFINGLQYKCRTCFDPATTVYPLADGCSNSRTWKDLLNDIVHLKINEADLLPKTICSKCLDKLISSYDFILHIQNVNEKYHQLLESAKNYFQNDNIASSSKNITKCLVESATALALDRCVSEIKCEDEHLMSYDIVLNNYDRRNDSVKEEDTFDPYMEHLKEYIELSSDNLQYQQRSPNEEIIEVLGDDVNDSDSENSQRFDKKKNSGDRIDEQIEKVHGNFVCAECKKSFTMQKLCRRHILMKHRQKQLFQCQFCDGIFKHKANLIAHIKRVHPGESFESNTNQLVLLFGERLYSKPLLLPRAECKLCGSTFTSKKTLLQHLDNHSEASALHSLKLSSDVIQRWFPNMKDLQVIKTMICKDIREKNWVKYYTILNDFSYEISISDTDAEDLEEESEVSANKYKCELCAKEFLFKYQVFSHLREYHLNEDIPLKCSNCNLEFISIKIYEQHKQTHCRHEHKLLNCQNCNGMFIWLENMQKHNCVTKILDIEKFLKDKISVKYKEVIRSSPVTIIRCGLCEMTFEKLRDLRQHMPLHADGKTGVDFDGCFYVNQFESVSTNRELLEQKIKNAFTKRQISQLYQAIDKNGKEMDISDSDTDEDDAVGGKSYLCELCYETFKKRKRLFNHQKEQHKDVSMPFTCKECKMQYVSIDLLQQHMKRECWNEHRRAAEQCDCCKERFIWPENILRHKEIQRYIRTKNSLSMNLCRDNIQICYCFLCPKNFANAELLNDHLMRHRLTPSTIKTVASTIHSLWWPNGRKIIKCKICDQEFSSIAKLNEHFSLKNPKNLCGAKQHYLANYSITNQMGFELHLELDSETETEENENILPYRCFICSKSYKRKFQITQHQRSVHNYEMLEFRCERCVFRTVSQKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQENLENHISIFHNSNVFFKTLDLANTTFTNAQCLQLKEASQNDFSLALHQNHSNARECIQSKDKFQCIICGIYIIKNDYSEHIRRHKYDKAYNCTLCEMVFIKRFSLLKHRSMTHTILYTDERPYRCTICLKFYRKSGHLVTHMRRHTDGKLKTQNNLSTPDKKKFKVCPICGVHRANIEMHIRSHMEDTPFKCDLCGKSFGSEVRLYVHRRTHFSKRSFKCKLCEKAYVHKYLLEMHMRSHTGERPYECTVCQKKFINSRNLQQHSLNHTGNKSFRCEVCNKAFHRATYLKQHRIRMGHHSENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399707;
- 90% Identity
- -
- 80% Identity
- -