Nfer004964.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000033.1:903655-909676[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 19 7.0 0.6 1 23 272 295 272 295 0.93 2 13 0.097 9.5 7.9 1.1 2 23 370 392 369 392 0.92 3 13 0.001 0.1 14.1 0.4 1 23 765 787 765 787 0.99 4 13 0.0009 0.088 14.3 3.2 1 23 793 815 793 815 0.96 5 13 6.8e-05 0.0067 17.8 0.7 2 23 824 845 823 845 0.97 6 13 2.6e-05 0.0026 19.1 0.8 1 23 851 874 851 874 0.97 7 13 0.092 9 8.0 0.2 1 23 1012 1034 1012 1034 0.97 8 13 0.00055 0.054 15.0 0.4 1 23 1040 1062 1040 1062 0.97 9 13 0.015 1.5 10.5 6.2 1 23 1068 1090 1068 1090 0.98 10 13 4.9e-05 0.0048 18.3 0.1 1 23 1096 1118 1096 1118 0.97 11 13 4.8e-05 0.0047 18.3 2.7 1 23 1124 1146 1124 1146 0.98 12 13 0.0033 0.32 12.5 2.3 1 23 1154 1176 1154 1176 0.99 13 13 4.9e-05 0.0049 18.3 0.2 1 23 1182 1205 1182 1205 0.97
Sequence Information
- Coding Sequence
- ATGATCAACACTTTGCTGGAGCATGTGCCCATCAAAATGGAAGTTAAAGACAATGATGAGGCTGCTGACAAAGCAGCAAATGCTGAAGTGGCAGAAGATGATGACAGAATTGATGAGACCGATGAAGAACTAGATGATGAAGACGAAGATGAAGAAGTTTCGGATACTGAAAGCGATGCTTTGGAAATTGAACAGCAGGCTATTATGTTAATAAGCAGCGATGAAGAAGCTGAACTGGAGGCACAGAGAATACGTTTTCCTGACATTGCAAGTGCAAAGAAAGTGCGCAAAGATTCCTATAGTTCAACGCGGAGCTCTTCGAGAAATAGCCAAACGAGCAGTTGTTCATCATCCTCCAAGCCACATATTACCTACGAAATTATAACTAGAAATCCGCCCATTGATAAAACCAACAACGAACAAAGAACTTCACCTTTATTGAAGAATAATGGGAACAATAAAAGTTTGGAGATCTGTAATAAAGAAAACAGCAACAGTGCACAAACTAAGGTAAAAAGCAAAACGGAAAACAGCAGCAAgttggaaaataataaaactttagaaaataataaaaataaacaggaCGAAGCTACAAAATGTCTGGatgagaataaaataaagaaaacttccGAAAATACACGCAACAATCGAGATCATCTACTCAAATGTCCAGGTAATGTTGTTACCGGGGAAAAAAGCCGTCGTGGCAGTAACAATTCTGCCTGCAGTGTTGCATCTACGCTGGTCTCCGAGAGAGCAGAGACTGAATCTTGTggcaatatttatgtatttaatttgcaGCAGAAACTTATATTTAATTGTGAATTTTGTGATTTAAAATATGGCGACTTGGCGAATTTTGGGCGACATCTGCATGAAGCTCACAAAGTTTTCAACATGCACGAAGGTGCCGAGAAGGAAAACGCGCCAGGAAATTTACCCAAAACCAGTCGCATATCTAATAATGCGCCAAATGTTAAAAAAGAACCTTTGCAGAGCTTAGAAGTATTGGCTGAACCACCTGTTGCTCTGCCGGCATCTGTTTTGGCAGAACCTCTAGACTCGTGTGGCAATGTGTTTATGCTTAATCATCGTAAATTGTTTTTGGTTTGTGGGTATTGTGAATGTAAATATGCCAACTtggatttgtttgaaaaacatTTGACGCAACAGCACCGTATTTTTGAGGGCTGTCGCAATGAGTTAAATGTGGTGCCTAAGGTAGAGGTGAAAGAAGAAGTATTTATTATCACAGAAGTAGTGGATAACCAAAATATAGTAGTAGCTCCCGAGGCTATGGTAATCATACCAGCTGACATTCCTTTAAATATATCTGACCCAATACAAAATGATGAAACGATACCATCTTTAGAGGACAGGGTGGAAACCAGTGTGCAATGTAGCAAAGAAAAGGCCACATCTTCCCTTGCCTTAGTAACGGAAAAATTAAACAGTAAAGATAAAGTTCAACCCAATATCAGCGAAGTTAATGTGGTCTCAGAGAAGAAAGAAGATGAAACACCAAAAGTTGTGGATAAGGAGGGAGTGTCACCCGCTGAGGAAGTCGTAGATAAAGACACAACATTGACTGAGAAAGTCGTTAATAATGAGTTATCATTGCCTCCTAAGCAGGttatgaatgaagaaattatTTCCACCAAGCAAGCTGAAACTAAAAGGCTATCTTCAACACCATCAGAATCGCCGAACAAAAAGGCTAAAAGAGAAGCGCCGAGTAATACAAATGTTCATCAGGAGccCATTATCACTGAGAAAGCCGACGAGCTTCCCGcaacaagtttagaaaataCAGAAGTTGTAGGAACAAAAGAAATTCCAGAACCGCCAACAATCAAAGAAGCAGAAGATTCCAGTAAAAACTGCGTAGAAACAGTGGAATCAATAAACGTTACAAGTCAAGAGGAGATTACAGAAATAAAGTCATTAAAAGTTACAAGTCAAGAGATTACAGAAATAAAGGAAACAAATAAACCTATAAAATCTGCGGAACCAAGAAAGCAGACAAAAGTAGCACAAACAAAAAAGCCAGCACCTCAAGCAGCTAAAGAAAGTGAACCAagtaaagcaacaacaacaacagcagcagcagcagcaccaacatcaacaacaacaacaacagcagcagctgcAGTAAAAATGGTAGAGACCAAAAAACGAACGCTGCCTGAAATAACAGCCTCGAAAGACTCTCGAAAAGCTACAAAATCTCCCCAAATGAAAAAACTCAAAGAGGAGGAAGCTGAAATTGAATCAATTCCAAATGAGCAAAAATTTCAGTGCTCAATATGCCTCAAGGAACTGGCTAGTAAATACTCATTGATACTTCATGAACGCACACATGCCGCAGATAAAACTTACGATTGCGAGGTCTGCCACAAAAGCTTCGAGAACACCTCAAGTCTCAGCGACCACAAAAAGTTTCACACGCATGAGCCACAAGAAATACTCAAGTGTACAGTTTGTGACATAGAGTTTATCCACAGCGATGATTACAAAAAACATATGGAAATCCACTCCAATgacaaaaagtttaaatgtgATATTTGCTTGCGTGGCTACTCGTCCAAGAGCAGTTTGCGCAAACATATCGAAAGAGAtcataaaacgaaaaaagaagtTGCAAAGTGTAAAAGGAAATCAGCTAGGAGACAGGAACTGCCGAGCACTAAACTTGAAAAGCCAGCAAAAACACAACTGCCCACAATCTCCTCCTCCTCAACAATAAATCAGAAAATAGAAGAAACATCCATTGCCCCAGAAAACAATGTAATGAATGATTTTGAAACTGATCCAGTCGATGACATTATTGAACAATTGCAAAATGAAACGGTGGAAAAAGAATTACGACCTGGCGAGATCCATCCAATAACTTACACTGTTAAAGCTGTCGAGCCGGAGAGCGAAGTTAAAGTAAAATCTTTGAAAACAGGCTCAGTAAACTCTGACGCCGAGCTCAATGAAACGGATACATCAGTGAAAGATAAAACCAAGGTTTTGCAAATCATTAAACGATTCTTCTGTGATGTGTGTCCTAGTGGATTCGAAAAGCAAGCACGTCTGCTGGAACATAAACGTGTGCATACGGGCGAAAAGCCTTTTCCTTGTGATGAGTGCGACAAACAATTCCGTGTACGAATAGGCCTCAAAGAACATAAATTACGACATACCaacgaaaagaaatttaaatgtgAAGTGTGTGGCTTGGGCTGTTTTACCAAACAAGACCTGCACATGCACATGCGTCATCATTCCAACGATCGCCGTTACCAGTGCATCATGTGTCCCAAGGCCTTTGTGCGTAGTTCTGATTTGAAAATACATGCGCGCATCCATACCGGCGAGAAGCCATATGTATGCGATATTTGTAACAAATCATTCCGCGCCAATCAAAATCTGTGCGTTCACAAAAAATCTCATATGGGCGAAGCGTCCAGAATCTACAAATGCGATCGTTGTGACAAGAAGTTCTTACGTAATATCGATCGCAAAGTCCATATGAGATCACATACGGGCGAAAAGCCTTTCAAGTGCGAAGTTTGTCAACGTGGCTTTTCCTCGAAAGTCAATGTAAGAGCCCACATAGAAAGGGAACATATATCGGAGAAAACTTCGAAATCCAAAAAGAAACCAGGACCCAAACCCCAGGCCTTAAGGGATGAGATAGCAAAGCAAAGAAAATTGATACAGGAACTGCAAAGCCAACTATGGCAACAAATTCAAACGGAGGAAAAGATCATACCATCCGATGAGGAAATGTTagagcagcaacagcaacagcagcagcagcagcagcaaacaTTACACGTTTCCAATACAAAAGCCACCCCATCCGCGAAAACGACCACAACCAGTAATAATGATCCTATACAAAGTGCTTACGAATTGCTAGAAAAACTGAAATCATCAACAACTACCTCCAAACCTTTAACTGCAATACCATCGCCTCCTCCGAAGGCCGAACTACCCGCTGCTATTCCctctaaaaaaagcaaaaaaggcTCAACAACTTTACTACCTCTTACTATAACGCAAAAACTAGAACAGGCTTCACCAGCACCCTCACCCTCACCAGCCGCCTCCACCTCATCCTCTACTTCCACTTCGCGTCTTTCTACACCCTCGCCGCCCAAGACCACAGCAACCAAGGTAGTGTCTCAAAAGACTTCATTGGGCATCCAACAAGTGTCGGTGACAGTTTCTATGCAAGTGGAAAATGTGGCACCAACTCCCAGCGCTCCTGAAAAAGAAAATGGTGGTATTTTGACGACATGCTCCAGCAGTACAAACAgtgttaaaaaagaaagaaagatcaCAAGTTATTTTACGGTAGTGGGCCAAAAGGCTGAAGTTTAA
- Protein Sequence
- MINTLLEHVPIKMEVKDNDEAADKAANAEVAEDDDRIDETDEELDDEDEDEEVSDTESDALEIEQQAIMLISSDEEAELEAQRIRFPDIASAKKVRKDSYSSTRSSSRNSQTSSCSSSSKPHITYEIITRNPPIDKTNNEQRTSPLLKNNGNNKSLEICNKENSNSAQTKVKSKTENSSKLENNKTLENNKNKQDEATKCLDENKIKKTSENTRNNRDHLLKCPGNVVTGEKSRRGSNNSACSVASTLVSERAETESCGNIYVFNLQQKLIFNCEFCDLKYGDLANFGRHLHEAHKVFNMHEGAEKENAPGNLPKTSRISNNAPNVKKEPLQSLEVLAEPPVALPASVLAEPLDSCGNVFMLNHRKLFLVCGYCECKYANLDLFEKHLTQQHRIFEGCRNELNVVPKVEVKEEVFIITEVVDNQNIVVAPEAMVIIPADIPLNISDPIQNDETIPSLEDRVETSVQCSKEKATSSLALVTEKLNSKDKVQPNISEVNVVSEKKEDETPKVVDKEGVSPAEEVVDKDTTLTEKVVNNELSLPPKQVMNEEIISTKQAETKRLSSTPSESPNKKAKREAPSNTNVHQEPIITEKADELPATSLENTEVVGTKEIPEPPTIKEAEDSSKNCVETVESINVTSQEEITEIKSLKVTSQEITEIKETNKPIKSAEPRKQTKVAQTKKPAPQAAKESEPSKATTTTAAAAAPTSTTTTTAAAAVKMVETKKRTLPEITASKDSRKATKSPQMKKLKEEEAEIESIPNEQKFQCSICLKELASKYSLILHERTHAADKTYDCEVCHKSFENTSSLSDHKKFHTHEPQEILKCTVCDIEFIHSDDYKKHMEIHSNDKKFKCDICLRGYSSKSSLRKHIERDHKTKKEVAKCKRKSARRQELPSTKLEKPAKTQLPTISSSSTINQKIEETSIAPENNVMNDFETDPVDDIIEQLQNETVEKELRPGEIHPITYTVKAVEPESEVKVKSLKTGSVNSDAELNETDTSVKDKTKVLQIIKRFFCDVCPSGFEKQARLLEHKRVHTGEKPFPCDECDKQFRVRIGLKEHKLRHTNEKKFKCEVCGLGCFTKQDLHMHMRHHSNDRRYQCIMCPKAFVRSSDLKIHARIHTGEKPYVCDICNKSFRANQNLCVHKKSHMGEASRIYKCDRCDKKFLRNIDRKVHMRSHTGEKPFKCEVCQRGFSSKVNVRAHIEREHISEKTSKSKKKPGPKPQALRDEIAKQRKLIQELQSQLWQQIQTEEKIIPSDEEMLEQQQQQQQQQQQTLHVSNTKATPSAKTTTTSNNDPIQSAYELLEKLKSSTTTSKPLTAIPSPPPKAELPAAIPSKKSKKGSTTLLPLTITQKLEQASPAPSPSPAASTSSSTSTSRLSTPSPPKTTATKVVSQKTSLGIQQVSVTVSMQVENVAPTPSAPEKENGGILTTCSSSTNSVKKERKITSYFTVVGQKAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397747; iTF_01398774; iTF_01399711;
- 90% Identity
- -
- 80% Identity
- -