Nfer003995.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nowickia ferox
Gene Symbol
-
Assembly
GCA_936446695.1
Location
CAKZFO010000027.1:5141433-5150287[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0047 0.46 12.0 1.6 2 23 237 259 236 259 0.96
2 20 0.088 8.7 8.0 2.6 2 23 319 340 318 340 0.96
3 20 1.1 1e+02 4.6 1.5 1 23 417 440 417 440 0.96
4 20 0.036 3.5 9.3 2.6 2 23 448 469 447 469 0.97
5 20 0.0084 0.83 11.2 0.2 2 20 529 547 528 550 0.94
6 20 0.00018 0.017 16.5 1.3 1 23 623 646 623 646 0.94
7 20 0.0016 0.16 13.5 1.1 1 22 653 674 653 674 0.96
8 20 0.0008 0.079 14.5 1.4 2 23 747 768 746 768 0.94
9 20 0.04 3.9 9.1 0.1 2 20 795 813 794 815 0.92
10 20 0.0003 0.029 15.8 5.8 1 23 866 889 866 889 0.97
11 20 0.0047 0.47 12.0 0.5 1 23 926 949 926 949 0.97
12 20 0.48 47 5.7 1.5 2 23 1004 1024 1002 1024 0.91
13 20 3e-06 0.00029 22.1 1.3 1 23 1030 1052 1030 1052 0.98
14 20 7.6e-05 0.0075 17.7 1.9 1 23 1058 1080 1058 1080 0.98
15 20 0.015 1.4 10.5 6.7 2 21 1087 1106 1086 1108 0.94
16 20 0.00022 0.021 16.2 0.2 3 23 1137 1157 1136 1157 0.99
17 20 5.1e-06 0.0005 21.4 4.1 1 23 1163 1185 1163 1185 0.99
18 20 1.3e-06 0.00013 23.3 1.4 1 23 1191 1213 1191 1213 0.99
19 20 0.0003 0.029 15.8 1.3 1 23 1219 1241 1219 1241 0.96
20 20 0.23 23 6.7 3.2 1 19 1247 1265 1247 1271 0.94

Sequence Information

Coding Sequence
ATGACGAATGAGTGTTTTATTAATGGAGTGCAGTATAAATGTCGCACTTGCTTTGATCCAGGAGCAACAGTATATCCTCTTGCAGAGGAGTGCAGCAACTCTAAAACTTGGCGCGATTTATTGACCGATATTGTTAAGTTAAAGATAAACGATGACGAGTTACTTCCAAAGACCATTTGTTCGAAATGTTTGGAAAAGCTTATCAGCTACTACGATTTTATACTTCATATTCAAAATGTGAATGAAAAGTACCACCAGCTTTTGTCAAGTGGCGAACATTCTTCGCAAAATGATAGTATTGCCAGCAGCTCTAAGGATGCAGCAAAATGCTTGGCAGTATCTGCCACTGCCTTGACTTTGGGTCAGGGTGTTCCGGAAATTAAGTTTGAAGACGAGCTCCTTATTCCTTACGATATTATTTTGAATAACGACAGTAAAAGAAACGATGCGCTCATTAGCATAATGATCAATAGAGATTCAACCTTTATATTTGCAGATATTTGTGATCCTTTTATGAAAACTTTGGAAGAGGATATTGAGCTCGCTTTAGATATGTTGCAATACCAACagagatcCCAAAACGAAGAAAATCGAGTTCTTGAAGATGATATTAACGATTATAATTCTGATAACAGTCAGCCAATCGAAAAGAGAACTGAAGAACAATTCTGCAAATACTTTCCAATCGAAAAAGTCAACAATCATTTAGTGTGTGGGATATGCcagaaattattttcttcgCAGTCAACTTGTCGCAGGCATATAATCACAATGCACTACCAAGGTAAATCGTACATATGTGCATTTTGTGATCAACATACGCAATGTAAAAATCACTTAATTGGACATCTTAAACGTAATCATCCAGAAGAATCATTTGAATCTAATGCGAAACAATTAGGTCATTTGCTTGGGGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAGTAGAATGTAAGCTGTGTTGTACTACTtttgtaactaaaaaaaaacttatccaGCATCTAGAGAGCCATAATGAGGCCAGTACTCTACACAGTTTACAATTAAGCAGTGATATTATTCAGCGTTGGTTTCCAAATATGAGAAATTTGCAAGTCCTAAAAACCATGATATGTAAAGACATTCGAGAAAAAAACTGGATCAaatattatacaattttaaatgatttttcctatgAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAAAAGTACCTGCCAACAAATATAAATGCGAATTGTGTGCGAAAGATTATTTGTACAAACATCAAGTGTTTGCTCATTTGAGAGAGGATCATTTGAACGAAGGCATTCCTTTGAAATGCAGCCATTGCAATCTGGAATTTATatcaataaaaatgtatgaacaaCATAAACAAACCCACTGCCTGTCTAAACATAAACTATTGCTTTGTCCCAATTGCAATGGCAAGTTTGTCTGGCTCGTAAATATGAAAAGACACAATTGTGTTACGAAAATATTGGATATTGAGAAAACTCTTAATGTTAAAGTAAATGAGAGTTGTAATGATGAAATGCgttcatcgccaaaaactatCATAAGATGTGGCCTTTGTGACATGACCTTTGAAAAACTGCGTGATTTACGACAGCACATGCCCTTGCACGCCGATGGCAAAACTGGAGTTGACTTTAATGGTTGTATTTATGTAAACCTATTTGAAAATGTATCCAGCAGTCGCGAATTGTTGAAACAGAagattaaaaatgcatttacaAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAGATGATGCTGATGAAGAAAAAAGCTATGTGTGTGAGCTTTGCAATGAAACGtttaaaaaacgaaaacttCTGTTTAAACATCAAGCTGAACAACACACGAATGTTTCAATGCCTTTCACTTGCAAGAAATGTAAGATGCAATATGTTAGTTTGGATTTGTTACAACAACATATGAAAAGAGAATGTTGGAATGAACATCGACTAGTTTCTGAACAATGCGATTGTTGTAAAGAGCGTTTTATTTGGCCGGATAACATGCTGAGACATAGAGAAATACAGcgATACATAAATAGTGACAATTCGCTAACGGATAACTTGTGTCGTGCCCAATCACAGAAAACAATTGCTTCATCAATCTCCAGCTCTGATGTGACAAGTGCCAATATccaaatttgttattgtttcttaTGTCCTAAAACTTTCGCCAATAATGATCAGTTCAATGATCATTTGATCGGTCATGGTCTCACACCATCCAACATCAAAATTGTTGCAAGCACAATACATTCTGTATGGTGGCCAAACGGCAAAAAgctaataaaatgcaaaatatgtgaccaagtttttttaagtaaggccgaattaaatgaacatttttcttctaaaaattccaaaaacttGTGTGGTGGAGGGCAACATTCAGTGGAAAATTACTCAATTACAAATCAAATGGGGTTTGAGTTACATTTAGAACTGGACTCGGAAACGGAAACTGAAAGCATCGAAaatgaagaaaatgaaaatatattgccATATAAATGTTGCATGTGTGGTAAATCATTCAagcgaaaatttcaaataactcAGCATCAAACATCGATGCATAACTATGAATTGTTGGAACTCAAATGCGAACGTTGCTTTTTTAGAACTGTATCACAGAAAGTTTTAGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATGAGTGTAATTTCAAATTTATGTGGCAAGAGAACCTCGAACAGCATATTTCGATATTTCATACTTCGGACGTCTTCGTCAAAGCACTGCATGCGGCTAACACAACGAGGAATACTAATGCTCAATGCCTTGAATCAGAAGAATCTTCCCAGAATGATTTGTCGTCAGCATTACATCAAAACGATTCAGATTCAAGGGACTGCATTCAATCTAAAGATAAATGTAAATGTCTCATTTGTGGAATTTACATTACCAAAAATAATTATGCAGAACATATTAGGAGAcacaaatgtgacaaatcttacAAATGTGATTTTTGCGAAAAGGCCTTTATAACAAATTCGTCATTAAAGAAGCATCAGGTCATGCATATGGTGGAACGTCCTTTCAAATGTACGTTATGCTGGAAATCGTTCAAGCGGCAAAGAGGTCTAGATGTCCATAAACGCTTACACACCGGAGAACTACCATGCAAATGCACAATTTGTTCGAAGTCATTTCTGCAATCGGCACATCTGACTGCTCATATGCGATGTCATTCGCGTGAAAAGGCAACGCCAGACAAGAAGTCGAACTCAACTGATTCTATCCAACTTGTACAAGCAGAAAGAAAGACGAAGTTATGTCCAATTTGTGGTGTCAATTTGTCATACAAAACGGATCTTACAATGCATATGAGAAGCCATACGGACGAAAGGCCATTCAAATGTGATCTCTGTgataaaagatttaaaagaTTAATCCATTTAAATATACATCGACGAACACACTTTACTGAACGTCCTTTTAAGTGTACAATTTGTGAGAAATCTTTTGTTCATAGAGGCGTATTAAAAGCACACATGCGCATTCACACTGGCGAGCGTCCATATCAGTGCACTGTTTGTCAGAAAAGATTTATGAATTCAGGCACTTTGAAGGAGCATTCGCTTAATCATACTGGCAAGAAACCATTTATATGTGAGATTTGCAATCGAGCCTTTAAATGTCCCTGGTATCTCAAAAGGCATTGTATCAAAAGTGGCCATCATACAGAAAATAATTGA
Protein Sequence
MTNECFINGVQYKCRTCFDPGATVYPLAEECSNSKTWRDLLTDIVKLKINDDELLPKTICSKCLEKLISYYDFILHIQNVNEKYHQLLSSGEHSSQNDSIASSSKDAAKCLAVSATALTLGQGVPEIKFEDELLIPYDIILNNDSKRNDALISIMINRDSTFIFADICDPFMKTLEEDIELALDMLQYQQRSQNEENRVLEDDINDYNSDNSQPIEKRTEEQFCKYFPIEKVNNHLVCGICQKLFSSQSTCRRHIITMHYQGKSYICAFCDQHTQCKNHLIGHLKRNHPEESFESNAKQLGHLLGERLYSKPLLLPRVECKLCCTTFVTKKKLIQHLESHNEASTLHSLQLSSDIIQRWFPNMRNLQVLKTMICKDIREKNWIKYYTILNDFSYEISISDTDAEDLEEETKVPANKYKCELCAKDYLYKHQVFAHLREDHLNEGIPLKCSHCNLEFISIKMYEQHKQTHCLSKHKLLLCPNCNGKFVWLVNMKRHNCVTKILDIEKTLNVKVNESCNDEMRSSPKTIIRCGLCDMTFEKLRDLRQHMPLHADGKTGVDFNGCIYVNLFENVSSSRELLKQKIKNAFTKRQISQLYQAIDKDGKEMDISDSDSDEDDADEEKSYVCELCNETFKKRKLLFKHQAEQHTNVSMPFTCKKCKMQYVSLDLLQQHMKRECWNEHRLVSEQCDCCKERFIWPDNMLRHREIQRYINSDNSLTDNLCRAQSQKTIASSISSSDVTSANIQICYCFLCPKTFANNDQFNDHLIGHGLTPSNIKIVASTIHSVWWPNGKKLIKCKICDQVFLSKAELNEHFSSKNSKNLCGGGQHSVENYSITNQMGFELHLELDSETETESIENEENENILPYKCCMCGKSFKRKFQITQHQTSMHNYELLELKCERCFFRTVSQKVLDYHRMSQCFDVEKKYQCDECNFKFMWQENLEQHISIFHTSDVFVKALHAANTTRNTNAQCLESEESSQNDLSSALHQNDSDSRDCIQSKDKCKCLICGIYITKNNYAEHIRRHKCDKSYKCDFCEKAFITNSSLKKHQVMHMVERPFKCTLCWKSFKRQRGLDVHKRLHTGELPCKCTICSKSFLQSAHLTAHMRCHSREKATPDKKSNSTDSIQLVQAERKTKLCPICGVNLSYKTDLTMHMRSHTDERPFKCDLCDKRFKRLIHLNIHRRTHFTERPFKCTICEKSFVHRGVLKAHMRIHTGERPYQCTVCQKRFMNSGTLKEHSLNHTGKKPFICEICNRAFKCPWYLKRHCIKSGHHTENN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01074740;
90% Identity
-
80% Identity
-