Basic Information

Insect: Nowickia ferox
Gene Symbol: rfx7.L
Assembly: GCA_936446695.1
Location: CAKZFO010000381.1:64981-78471[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.6e-20 4.5e-16 60.2 0.1 32 78 7 53 5 54 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.6e-20	4.5e-16	60.2	0.1	32	78	7	53	5	54	0.96

Sequence Information

Coding Sequence: ATGAAATTCgaaatAGTTTATTGTGATCGTTTGGATATCAAACCCTTGTCTACAGCTGATTTTGGAAAAGTTATGAAGCAAGTATTCCCCGGGATACGACCTAGACGCCTAGGAACGAGAGGTCATTCACGTTATTGCTATGCTGCTATGCGTAAAACAAGCAGATTACCAGCACCCCATTTACCCACATTGACAACAGTGAAATCATCGAAAGGGGTTGGCGAAAAAGATGGGAGCATAGATTTATCTATGAATATTATTGACACCACAGGAGAACAAGCGGAATCATGGATCGTTGTGAAGCAATGGGCAGAGTCTATGTTGCACGTTAAACTAGATAATATTACGGACCTCGCAACACACATTAAATCAAATGCAAATATGCCATTGCATACACCCTACACCGGATCCACTAGAAGTGCAAGTATTGGGGTTACGAACAAAAAACTTGCACAGAGGGAACCTAAAGAAAAAAGGGCAATGGCGGATATTGGACCTTTAAAGAAACGCCGAAAAAAGAAACGAAAGGGATCTTCTTCGTCGGAGTCCAGTTACAATCAAAATATTAATGTGGGCGATCAACAACAATTACAACCGCAATTATCACCAGCCAACAGCTCGAAAAGCGGTAGTCATCATGCCGTACTCTCGCCAGCCGCTGACGATGGTcagaaactaaaaataaaacaagaaataataGATTCTCCTGGTTATCCACACTCAGTGGGCAGTTTATCGACCCATTCGCAATCCACTGATTCCGCTAACGTAACTCAATACCAAACATCTACAATAGTcgaaaatgctttaaaaatacCACAACATCAAGTAATGCCGATGAACTTAGCTGCTGAAACGAGAGGTGGATCATGCAACGTTTTCACTAGAACTCCATCAACCACATCATCCTTAAGTACAAGCGCTTTCGAACACGTAAGACCATCAAGCGGAACAATACCCACAACAACCGTGGTAGCAGCTGTAAAGAATTTAACTCCTAAAATAATGGAATTATCCACGGAAAATCCTGCTATATCTTCACCTCCATCAGAAACTATTATTAAGCAAGAGATTGGAACCGAAGATTACAatacttcaaatattttttgcaagaaagtGCGAAAAGCACAGCAAACAAAAGGATTTTGGGCCAATTCACCAACATCGAATCGATGCACTTCAATTGCGACTACAGCAGCCAGTTTTCCTATTATAACCACAACAGCTTCGACGCCGCCTCCCGTTCCGACAAGTGTTATATCTACACCATCAAATAACACTGATTCCGTTGTAGTTTACAACATGGGACCACCCACACAAATGGCTCCTTCTATTAGCCCCAATAGTCAATCAATAAATGATGATGTTAACTCTTTAGGACAACCAAAGGTGCTTTCACGCAATTTGCAACAGTTGAAAGCTAAGAAAATAATGGCTGCTGCAGCAGCGGCAGGCTGTGATCCTCCCGACTTAAATGCAGCTAAAGAGGCAGCCGATTTGCCAGCAAATTTAGGTCTGCCGCGAGAGCGTGTTATAAGCATATGTAATATGGATAAGCATGAGTTAGATGATTACTTTTTACCAGTAGAAGAGGAAAATTCCGAGGATCAAGAAACTGAGTTGCTTCAATATTTTCAGATGGGAGACGCTGAGgaaaaattaaccaaaaattCTTCCTCTGATGCTAAACGGAACAGTAATTCAACAGTAAGTCAATTGACGTCCGTCACAACACCAATAACGACATCCAACTTAAAATCAAGCACCACAACAACTGTATCAACTGTAGGATCGTTGTCATTTACGTCAACTTCGACAATCACAACATCAAAAATTTCAACCGGCATAATGATGAGCACATATAAGTGTATAAACAACACACAGTCCACAAACAACATAGGAACAAACAGTCaattacaaaatggaaaagCACAACAATCGTACATTTTGGATTATCCAAATTTAAGAGGAAATTCCTTAAGTAAATTGTCACTAAGAGCAAAAACATCGTCGTGCTCAAATACTGTTGGTACTGCCTCAGCGTCTCTACCACAAATAACTCAAAAgcatcaacaacagcaacaacaacatatgcaacaGCCGCAGCAACAACTTCTGCAACAATCTATATCACAGCATCAGCAACAAACAACACATCCTCCATCATCATATTCAAAGGTTTCTTTTAAacgtaaaataaatgtaaatacaaaaaataccaCTTCAGACATAACAGCGGCGAGAAAAAACTACAGCTTTCTACCAATATCACCAAATATCAATTCAACGTCATCGTCCTCTCtgaccaacaacaacaatataaatAGCTCAGGTATTGGACTTTTTGCCAGCCCTGGCCTGTCGCGCTTACTGGTCAAACAACAATCTTTGGATTGTGACACCTCTTCAGATCCCATGATTGGAGCAACGCGACGACTTCGTTCTTACAATTCGTTGATGACATCAGCTTCAGCACCTCCAAGTCCTTCGGTGTTGAAACAGCAGCAAGACCAACATATGTTTGGTCACATGACACATAATATGTTAGTGGATCATTGGTCTCATTCTACCGGTCCCTTTAATAACCCATCAACTTCGACAAACGTTGCCAACTCCTTGATGGTTGATCAAAATTCCTTGGACCTAGATTTATTTGGAGAAGCAGCTGCTGCGGCAGCTTCAACAGCAACCGATAGCACTTTTGTCAGtagaaataatttcaatatgggAATAATGAACACGTCTGACGGAATAATGAGTAACAATGCTCAAAATTCAGGCGGACAGATAAATGATGTGATACAACGATCGCAATCTGTTCCACTATCACACTTGCAGCGTTCTCAATCGCCCACATTTAACCAAATTTTTCAATGTGACGTAAACAATCCGAGTGCTATCTCGGAATGTAATTCATTGGCACAAACACCCGTGCCATCCGAACTTATTGATTCTGGTGCAATGCTATCCGAAAACAGCTGCAGCCAGCAGAGTTCCACAATAAAACTAGAAGAAATGGTCAATGTTGTAGCTTCCGATTCCACAGCTATATTGGATGAAGTGGATGTGAGTGAAATTCTGTCATCACCAGactttgttacaaaattttcaagtcTTAACCAGACGTGTCCAACGAAAACTACTTGTTCCTCGGCTGGCTCTTCGTCTGGCTACAGTAGTACTGGTAATTTTTCGCTTTCATGCGGTAGTTACAGCATTGGCGGAGGTGGCAATAGTTTGGGTAGTGGTGCAATGGCTTCATCGATATCACGTTCAGTACCCTCGACTCCATTGCCTCATCAGAACCCACAAAGTCTGTTTGGAAATGGCAATAACTTCTACAGGAAACGTTTCATAAATAATTGTCAATCACTAAATGGTAGTGCTGTAGCTGGTGGAGTCCTGGATAATCTAAATTCTTTTTCCAACAATTTCTCATCCGGCGGAAAATACGTTTATGGCAATATCTATTCATCGTTGTCCCGTTCTGCGTGCGATATCTCTAAGTCAATGCCTTCTACACCCATAACGACAACGCCAAGTAGTTTTCGTTATAGTCCTTCAGAATTTACACGTGATTTCCTTATTAACGGAAATACTATAGATGATAGTATAACATCTTCCTTTGGTGCGGTGGGCAGTGATAATCTGATGGGATCAAATTTAAATTCCGAGTCCCTGCTTAATGAAGAAGACACTTTGATCAACGATTCGACGGTGATGAGTCAAGTTGATACTGGCGTGTTGACACCTGATTTTGCTGTACAATCTGAAACGTCGGCGACAGCCTTGGGCGGAGTTGTAGGTGAGTCATCTGTTGTTATTGGCGTGGGATCAGACTTATTAGATAATTTGTAG
Protein Sequence: MKFEIVYCDRLDIKPLSTADFGKVMKQVFPGIRPRRLGTRGHSRYCYAAMRKTSRLPAPHLPTLTTVKSSKGVGEKDGSIDLSMNIIDTTGEQAESWIVVKQWAESMLHVKLDNITDLATHIKSNANMPLHTPYTGSTRSASIGVTNKKLAQREPKEKRAMADIGPLKKRRKKKRKGSSSSESSYNQNINVGDQQQLQPQLSPANSSKSGSHHAVLSPAADDGQKLKIKQEIIDSPGYPHSVGSLSTHSQSTDSANVTQYQTSTIVENALKIPQHQVMPMNLAAETRGGSCNVFTRTPSTTSSLSTSAFEHVRPSSGTIPTTTVVAAVKNLTPKIMELSTENPAISSPPSETIIKQEIGTEDYNTSNIFCKKVRKAQQTKGFWANSPTSNRCTSIATTAASFPIITTTASTPPPVPTSVISTPSNNTDSVVVYNMGPPTQMAPSISPNSQSINDDVNSLGQPKVLSRNLQQLKAKKIMAAAAAAGCDPPDLNAAKEAADLPANLGLPRERVISICNMDKHELDDYFLPVEEENSEDQETELLQYFQMGDAEEKLTKNSSSDAKRNSNSTVSQLTSVTTPITTSNLKSSTTTTVSTVGSLSFTSTSTITTSKISTGIMMSTYKCINNTQSTNNIGTNSQLQNGKAQQSYILDYPNLRGNSLSKLSLRAKTSSCSNTVGTASASLPQITQKHQQQQQQHMQQPQQQLLQQSISQHQQQTTHPPSSYSKVSFKRKINVNTKNTTSDITAARKNYSFLPISPNINSTSSSSLTNNNNINSSGIGLFASPGLSRLLVKQQSLDCDTSSDPMIGATRRLRSYNSLMTSASAPPSPSVLKQQQDQHMFGHMTHNMLVDHWSHSTGPFNNPSTSTNVANSLMVDQNSLDLDLFGEAAAAAASTATDSTFVSRNNFNMGIMNTSDGIMSNNAQNSGGQINDVIQRSQSVPLSHLQRSQSPTFNQIFQCDVNNPSAISECNSLAQTPVPSELIDSGAMLSENSCSQQSSTIKLEEMVNVVASDSTAILDEVDVSEILSSPDFVTKFSSLNQTCPTKTTCSSAGSSSGYSSTGNFSLSCGSYSIGGGGNSLGSGAMASSISRSVPSTPLPHQNPQSLFGNGNNFYRKRFINNCQSLNGSAVAGGVLDNLNSFSNNFSSGGKYVYGNIYSSLSRSACDISKSMPSTPITTTPSSFRYSPSEFTRDFLINGNTIDDSITSSFGAVGSDNLMGSNLNSESLLNEEDTLINDSTVMSQVDTGVLTPDFAVQSETSATALGGVVGESSVVIGVGSDLLDNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399210;
90% Identity: iTF_01399210;
80% Identity: -