Nudd052360.2
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991079.1:12582377-12590777[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-05 0.096 14.4 0.5 4 43 282 322 280 331 0.86 2 4 0.00057 5.5 8.8 0.2 20 44 355 379 348 387 0.84 3 4 0.042 4.1e+02 2.8 0.0 21 44 384 407 381 414 0.88 4 4 0.052 5e+02 2.6 0.0 22 47 413 438 409 444 0.82
Sequence Information
- Coding Sequence
- ATGGATAAGTTCCATCACTACGGAATACGAGATTTGCGCCACGAATTGATCTCATCATTTTTGTCCGACCGGAGACAGGTTGTCAAGTTATCCGCGGGCGGAAAACGATTGAAATCTAGTGCTGGCAGCGTGAATATAGGAATTCCTCAAGGTTCAGCGTTAGGAAATACCCTCTTCATAACGTTTATGAACGACCTTCCCGCTGCCATCACGGCTGGCCTCTCAGTCTTATTCGCGGACGATACCACGGTGGTAGTTAGTGCGCGTACATTTGAACAGCTTGGGGAAAAGGTTCATGACGGATGTGATCAACTGCAGAGGTGGTTTTCTACCAATGGCTTACTCTTGAACATAGCTAAATCCAGCAGCATGGTCTTCACAGGCCGCAAAATTTTAATTCCCCCGTGTGTAGCGAACAGCCCTATGCCGATAAGTGATGAATGTAGGTTCCTTGGCTTCACTCTGGACTCTAATCTTAACTGGAAGTGCCATGTGGACAAATTATGCGATAGATTGAGTAGTGCAGTCTTTGCCTTACCAGGAAGTCGGCCGCTGGTGCGCGAGTGCCGGGTGCTGGTGTCGCGCGCCGACGCGGCCGCGTGTCTtgcccccgcccccgcccccgccacACCCCGGGCCCCCCGCCGCCCCGCCCCGCCCCGCACCGCCACACACCTAAACACTTACGTGTGCGACGCTTGCGGCAAAACGTACCGATACAAACTTTCTATAATACGGCACATTACGATGCACCTGCGGGACAAGTCTGAAATGATACCAAAAAAGGCCAAGTTCATTAACTACTACCAACTTACCGGCAAGTCATATTCATGCGAAATATGTAAAAGGGCGTTTAAACTGCCTGGGTATTTGAGAGACCATAAAAGAACTCACACGGGCGAACGGCCCTTTTGCTGCCCAATATGTAAAAGACAGTTCGCGGATTCGGGTAAtctaaaaaaacatgaaattattCATACAGGACTCCGGCCACATTCCTGCGACTTGTGTGACAGGAAGTTTGCGCTGTTGTCGACTCTACAAGTGCACAGGAGAACTCACACCGGCGAGAGGCCTTACTGCTGCGATATATGTAACAACAAGTTCACCCAGTGGAGTAATTTAAACAGACACAAACTCACTCACACTGGGGAAAAGCCTTTTTTCTGTGATATCTGTAACAAAAGATTTGCTGACTCTGGTGATTTAAAGAAGCatagtttattaaataatgatGAAAAATCGTACTCGTGTGAATTATGTAAGAAAGCGTATAAGCAGTTGAATAATTTGAAGACGCATAAACGAATTCACACTGGAGATAAACCATTCTGCTGCATGCGTATACAGCTGAACTTAATCTTTTGGATAGAACTGCAGTATGAGGTCCCCATTGAAGTCTAG
- Protein Sequence
- MDKFHHYGIRDLRHELISSFLSDRRQVVKLSAGGKRLKSSAGSVNIGIPQGSALGNTLFITFMNDLPAAITAGLSVLFADDTTVVVSARTFEQLGEKVHDGCDQLQRWFSTNGLLLNIAKSSSMVFTGRKILIPPCVANSPMPISDECRFLGFTLDSNLNWKCHVDKLCDRLSSAVFALPGSRPLVRECRVLVSRADAAACLAPAPAPATPRAPRRPAPPRTATHLNTYVCDACGKTYRYKLSIIRHITMHLRDKSEMIPKKAKFINYYQLTGKSYSCEICKRAFKLPGYLRDHKRTHTGERPFCCPICKRQFADSGNLKKHEIIHTGLRPHSCDLCDRKFALLSTLQVHRRTHTGERPYCCDICNNKFTQWSNLNRHKLTHTGEKPFFCDICNKRFADSGDLKKHSLLNNDEKSYSCELCKKAYKQLNNLKTHKRIHTGDKPFCCMRIQLNLIFWIELQYEVPIEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072873;
- 90% Identity
- iTF_01072873;
- 80% Identity
- iTF_01072873;