Nudd047608.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:94841-100589[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.72 6.9e+03 -1.1 0.2 21 43 172 194 145 198 0.72 2 6 0.00039 3.8 9.3 0.0 21 46 200 225 190 230 0.90 3 6 3.3e-05 0.31 12.8 0.0 21 46 256 281 244 285 0.88 4 6 0.02 1.9e+02 3.9 0.0 18 44 310 337 306 344 0.78 5 6 0.12 1.1e+03 1.4 0.0 26 44 347 365 340 370 0.86 6 6 0.0096 92 4.9 0.4 21 52 370 401 365 403 0.89
Sequence Information
- Coding Sequence
- ATGTCGTTGGATGGGGTCCGAGTGAAGGAAGAGCCGAGAGACTGTGCTGACACGGACCACAATGCAGTATGCGTGAAGCAAGAGGTGTTTGTAAAGCAGGAGTCTGCGTGTGCCTGGAGCAGCGCAGACTGCAGCAAGGAGGTCCCGGTGCGGGATTTCCAGTATGAGATCAAGCTGGAGCCAGAGTGTGTGCTGGCAGCCAAGCAGCTTCCTGACCCGCTTCACCCCTCTTCCACCGCCGCGGCCAAGAGCGCTGACCAGGAAACTTCACGACAGGCGCTAAACACCAAACTCCAGACCAAGACTTTCGCGTGCGCCGCGTGTGGCAAAGTATTTATACGTAAACCCCAACTAATCAGCCACATTAAGTCATGTCTTCAGGAAAACCCCGGGATGTTATTGAAAAAGTCGAAAAGAATCAAAGAGCGAATTAAAAAGCCATACTCCTGCGAAACGTGCAAAAAGGAGTTCACTCAATTGAGCCATTTAACTGAACACACGCGGATTCACACCGGCGACAAGCCTTTTCCCTGCGAAATATGTAAAAAGGAGTTTACGAATGCCAGTCATTTGAAGAATCATAAACGAATACACACTGGCGAGAAACCTTATTCCTGTGATATGTGTAATAAAGGGTTTGCACAACTAAGTAATTTGAAAAGACATAAGGAAGTCCACATGGGAACAAGGTCGTTTCCATGTCAAACGTGTAAGAAGGAGTTCACACAGTTGGGCCATTTGAAGAACCATATACGGACACATACAGGTGAAAAGCCTCATACTTGCGAAGTATGTAAAAAAGAATTTGCACAGTTGAGTAATTTGAAGAGACACGAAGAAATCCATAATGAGACTGTTAACAAGACTTATTCCTGCGAAATCTGTAAATTGGAGTTCACTAAATCGATTCAGTTAACGACTCATATACGGAGTCACGCTGAAGAAAAACCGTATGCCTGCAAAATATGTAAGAAAGATTTTGTGCATTTAGGTAACTTTAAGAGACACGAGCAAATTCATGAGCGAACAGAGTCGCTGTCGTGCGAATTGTGTAAAAAGGAGTTTGAGGATGCGCGAGACTTGAAACGACATCAGCGGGTTCACGACCACGAGAGACCATATGCCTGCGATATGTGTTGCAAGAGGTTTTGGCGCTCGAGTGATGTGAAGAGGCACAAGCGAGTGATGCACGATGGGCAGCCCGCGTTTGCGCCCGCGCCGACCTCTGCGGGGTCCACAGCCGCTTGA
- Protein Sequence
- MSLDGVRVKEEPRDCADTDHNAVCVKQEVFVKQESACAWSSADCSKEVPVRDFQYEIKLEPECVLAAKQLPDPLHPSSTAAAKSADQETSRQALNTKLQTKTFACAACGKVFIRKPQLISHIKSCLQENPGMLLKKSKRIKERIKKPYSCETCKKEFTQLSHLTEHTRIHTGDKPFPCEICKKEFTNASHLKNHKRIHTGEKPYSCDMCNKGFAQLSNLKRHKEVHMGTRSFPCQTCKKEFTQLGHLKNHIRTHTGEKPHTCEVCKKEFAQLSNLKRHEEIHNETVNKTYSCEICKLEFTKSIQLTTHIRSHAEEKPYACKICKKDFVHLGNFKRHEQIHERTESLSCELCKKEFEDARDLKRHQRVHDHERPYACDMCCKRFWRSSDVKRHKRVMHDGQPAFAPAPTSAGSTAA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072799;
- 90% Identity
- iTF_01072799;
- 80% Identity
- iTF_01072799;