Nudd050398.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:197447-210362[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0091 87 5.0 0.0 23 52 39 68 27 70 0.85 2 9 0.1 9.6e+02 1.6 0.1 22 46 66 90 61 96 0.84 3 9 0.00034 3.3 9.5 0.1 22 44 94 116 85 124 0.83 4 9 0.01 98 4.8 0.0 21 47 121 147 118 154 0.85 5 9 0.24 2.3e+03 0.4 0.1 21 43 149 171 144 175 0.84 6 9 0.0035 34 6.3 0.2 21 46 177 202 172 208 0.87 7 9 0.043 4.1e+02 2.8 0.1 21 45 205 229 201 239 0.79 8 9 1.4 1.3e+04 -2.0 0.0 21 43 233 255 223 259 0.73 9 9 0.00021 2 10.2 0.0 21 44 289 312 280 317 0.86
Sequence Information
- Coding Sequence
- ATGTTCGATTTCGAACTtcccggtagcaccccagAGGAAGGACCCGTGTCGACGTGCGGAGCTCGAGCCAGCTCCCTGGAGCCCCGCGCCGGGACCCCGTCCGCGGGCGCCATCGACCCTACAACCTGCTGTGTTTGTGGCAAAAAGTTCAAGAAAACGAGCGTGTTGAAGGTGCATATGCGGCTTCACACTGGTGACAAACCGTACGCCTGCAATATGTGCGAGAAGCGATTTAATCAATTGATCCATTTAAAAAGACATGAACAAGTTCACGGCGAACAAAAACCTTTTGCCTGCCCAATATGTGATAAACAATTCACACAGCCAAGCGATTTAAAGAGACACGGAATGATTCACACGGGGGAGAAACCTTTCAAGTGCGATATATGCCATAAAGGGTTCACACAAACGGGCTCGTTAAAAACGCACACGCGAGTTCACACGGGAGAAAAGCCTTACGCCTGTGAAATGTGTGAGAAACGTTTTGCGCAACAGCACCAGTTAAAGGTACATGGACGTATTCATACGGGAGAAAGGCCATATAGTTGCGAAATATGTGAAAAACGGTTCACGAAAGCGGTGGACTTACAGAGACACTTGCGCGCGCACTCAGGAGAGAAACCTTTCTCCTGTGACATATGCAAAAAGGAGTTCTCTGATGTGTTGTATTTAAAACGACATGAGCGggtacacacaggagaaaaaccatACGGCTGCGACACTTGCAAAAGAGAATTTACAGAATGGGGCAGTTTGAAGAGACATGAGCGAGTTCACACGGGGCACAGGCCCTATCCGTGTGAAACATGTGGAAAGCGGTTTAAGCTACTGCACTCTTTGAAAATGCATAACCGCATTCACAGTGGAGAAAAGCCCCATTCTTGTCCTATTTGTGGGAAGAAGTTCACAGACTCCAACAGTATGAGAAAACATGAGCGGATTCACACAGGTCTGAAGCTAGTGATGGGCACCGCGGGGTGGGGGCAGCAGCGCGGAGGACTTGGGGGATGGTACGAGCCGTACGAGCTAATAGCGGGGCGCGCCGCGGGGCGGGGGCAGCAGCGCGGAGGGCGCGGGGGATGGTACGAGCTAGGGGCGGGCGCCGCGGGGCGGGGGCAGCAGCGCGGAGGGCACGGGAGATAA
- Protein Sequence
- MFDFELPGSTPEEGPVSTCGARASSLEPRAGTPSAGAIDPTTCCVCGKKFKKTSVLKVHMRLHTGDKPYACNMCEKRFNQLIHLKRHEQVHGEQKPFACPICDKQFTQPSDLKRHGMIHTGEKPFKCDICHKGFTQTGSLKTHTRVHTGEKPYACEMCEKRFAQQHQLKVHGRIHTGERPYSCEICEKRFTKAVDLQRHLRAHSGEKPFSCDICKKEFSDVLYLKRHERVHTGEKPYGCDTCKREFTEWGSLKRHERVHTGHRPYPCETCGKRFKLLHSLKMHNRIHSGEKPHSCPICGKKFTDSNSMRKHERIHTGLKLVMGTAGWGQQRGGLGGWYEPYELIAGRAAGRGQQRGGRGGWYELGAGAAGRGQQRGGHGR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072794;
- 90% Identity
- iTF_01072794;
- 80% Identity
- iTF_01072794;