Nudd051493.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:14402741-14406154[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0057 54 5.6 0.0 26 48 65 87 48 91 0.86 2 6 1.3e-05 0.12 14.1 0.0 16 48 121 153 117 156 0.92 3 6 0.00081 7.7 8.3 0.1 23 48 156 181 152 185 0.91 4 6 0.01 99 4.8 0.8 25 52 188 215 183 217 0.88 5 6 0.27 2.6e+03 0.2 0.0 27 48 247 268 240 273 0.87 6 6 0.24 2.3e+03 0.4 0.0 27 48 377 398 352 401 0.89
Sequence Information
- Coding Sequence
- ATGACGCTTGTCCACCCAGCTGAAGACATATCCTTAACTCCTGCACTGCATAGAGAGCCAACAAATCTCCAAACACAAATTCAACTGGGTCCCCCACTAAATGGATATAGCTGTCCggaatgtaaacatattttagcAACCCCGGACAGCTTTAAGGAGCACATGCAAGATGCACACCCGAAGTTCCAAGTTGCTTGTAAATTATGTCACAAAGTATATAAAACTGTCAAAAGTTTGAGACGACATGAGAAGAAAACTCATGCAGATAAAGTGGAAAAAGAGCAGAGAGTAGGAGATTTACCATGTCCCCATTGTTGTAAGAAGTTTAGCAATCAAACAGCATTACACTGGCATATAGAGCGGAATCATACAGACAGTCAAAAGACAAGTACTTGTAAGCTTTGCGGAAAAGAACTATCGGACGCTGCTAATTTGAAACGACATCTAGAAATGATGCATTCATTAGAGAGTGCTAGCTGTTCGATATGTAATAAGACTTTTAAAAGTTTAACTAACTTACAGAGGCATATGAACGTCACACATCCTCCGGAGGACGCCGCACAGACTTGTAGTGTTTGCAACAAAACTTTTAAATGCTCATTGCATTTACGAATACACTTAAGGACCGTTCATGTACCGGAACCTGCCTTCAActgtgatttgtgcaataaagaatttcCATTGAAGAAATACATGATAAAACACAGAAAAACCCATGTTGATGTTAAAACATTCCCTTGCAGTGTTTGTGGCAAAATGTTTAAGAGTTCCGAAGATGTCAGGAAACATACAAAGCGAGTACACATGAAGACAGAACCTCCTAAAACGCCACAGAGAAAACCCAGCATTTGTGATGTCTGTGATAAGAAGTTCTCTCATAGAAAATATATGCTCTTGCATAAAAAAATCCATGTAGACATCAAATCATACAGTTGCGAATTTTGTAGCAAATTATTCAAGTGCACTAGCCATGTCAGAAAGCACACAAGACGACTTCACTTGAACCCTGTAGAATTTCACAATGTGAAATATACAATGTTTACCTGTGATACAtgtaaaaaatcatttaatacaAAGAAAAGTGTGGCTAAACATATTAAAACTCATTTCGCAACAAAAGACCTACCTTGTGGCATTTGCGATAAATTATTCAAATCTAACAGTGATGTTAATAGACATTTAAAACGAGTGCACATGAAAGGAATAATAGTAAGGCAAACAGAAAATGcagaaacaattacaaaaacagTAAATACAGTGAAAGTAAACAGTGAAGATTACACAAATGATGCTCTTAAGAATATTGAGTTTACGGAGAAAGTTCTTGCAAACACAAAATACACAGTTAAAGCTCTTGAGATCACAGAATATACAGATGAAGTCCCTAGAAGCGAGGATTACAGATTGGAGACCCTTGGAAGCTCTGAATACTTATTAGAAATGCTTGAAAATACTGAATATACATTGGAAGCTCTTAAAAGTACAGAGCATATAGATGAAGAGTTATGTAATACAGATTTTATAGAAGAAGCCCTCATTAGCACTGATTACTCAAAAGAAGCCTCTACATGTACAGAGTTCACGCAGGAAGCCCTTAGAAATACAGAGTTTACTGAGGATGCAACTAGTATAGGGAATACGGACAAAACTCTTCAAAATACAAAGCTTGAGACAGTCTTTGGAAGTATAAACAACATAGAGTTAGGTAAGCCCCTTGAAAATATAGCTGCCACTGTTAAAGCCCTAAGAAATACGGATATTCTAAAGGACGCCATGAAGATTTCCGATTTTACTATGGAAGATCTTGGCATTACAGAAGATGCGGTTAAAAGTACGAAATCTGAAGAAGCTGTTGGAAGTACAGATATTGGTGACACTTTTCTCGATATACAGTGCACAACTGAAGCTCCTATAGATATAAAGTTCGCAGATAAAGCCCTTGGAGCTACAGATATCATAAAGGACGCCATAGCAATTTCAGATTTTACAATTGAAGACCTTGCTATAACAGAGGAAGCAGTGGAAACTACAAAATCTAAAGATGCTCTTCATAGTACAGTTATTATAGAAACTCTCAAAAATATGAAATGCGTAAAGGAAGTCACTGAAGAGAAAGAATTCGCAAACATACCCATTCGAGATCCAGAGTTCACTAATAAACTTCGCCATAAAGATATTATAAAAGAAGCCATCGAAATTTCAGATTTCACAATGGAAGACCTTGAGATACCAGAACACGCAGAAAATACTGTTGTAAGTGCAGGATCGGCAAAAGAAGCCATCGAAAGTATCCCAATGAACACCTTCGAATGTCCAGCAGACACAGAGGAAACTATTAAAGATACAGACTTCATGGAGTCCACAGATAAAGTCCATGGTAATACAGATATAATCAAGGAGGCAATCGATTCTGTTTTCACGATGGAAGACCTTAAAATTGCAGAGGAGACTGttgaaaaaattatacctaAGGAAATCCTCGAAAGTACAGAGATCACTGACAAAGCTCTTTCCAGTAGAGATATCATGGAAGCCCTCGGAAGTACAGCAATCGCCAGGGAAGCGCCTGGTGACGAGTTTGCCGATGAAGTCCTGGAAAATATAGAGTTTAGAGAGAATGCCCTGGATAACACAGACATTATAAAAAATGCCATCGAAAACTCCGATTTCTCAATAGAAAACCTCGGGCTTACAAAATATACAGACGATGCTCTCGATCCTACAGGATATACCATGGAAGACCTTGGCATCAACGAATGTCCGGAAGTACTTGGAAGCACAGATTTTGAAGACGCCCTCTGTAGTACAGAGTTCGGAAAGAAAAATGGTGATATAGAGTTTGCAGAAGTCCTTCGAAGTGCAGACTTTACAGACAGCACACTGGGTTTCATAGAAGAAGCCCTCGGAAGTACAATAATCGAAAACGAAGCGCCTGCTGACATAGAGTTTACCGAAAAAGTTTTGGAAAATACAGAGTTGTCAGCAAAAGACCTTGTAAGTACAGATTTCTTAGAAGAAGCTTTAAAGAGGACTGATTTCACGGAAGAAGCTCTTAGAAGTACAGAGTTAGAAGAAGATCTTGGAGGTACAGATTTCATAGAAGCTCTAGCAAATACAGACTGTTTCAAAAACGCTCCAAATTGTACAGACTTTACAGATTCAGTAATTGGAAATGATATTATAAAGGAAGCTGAATTTACTATAGACGATCTCGGTATTACTGGATACACAGGTAATATTCTAAGTACTGATTACAATATGGATGAAATGAAGGTCACGGAATGTCCAGAAGCTCTAGATATTGAGTTGTTGAATTGTCTAAAATGTGGCATTGATTTTAAGAATGATGTCGATTTACACACGCATTTGTGTGGTGGAGAGATGACATTGTTTCTTGATTTTCAAGATATGTAA
- Protein Sequence
- MTLVHPAEDISLTPALHREPTNLQTQIQLGPPLNGYSCPECKHILATPDSFKEHMQDAHPKFQVACKLCHKVYKTVKSLRRHEKKTHADKVEKEQRVGDLPCPHCCKKFSNQTALHWHIERNHTDSQKTSTCKLCGKELSDAANLKRHLEMMHSLESASCSICNKTFKSLTNLQRHMNVTHPPEDAAQTCSVCNKTFKCSLHLRIHLRTVHVPEPAFNCDLCNKEFPLKKYMIKHRKTHVDVKTFPCSVCGKMFKSSEDVRKHTKRVHMKTEPPKTPQRKPSICDVCDKKFSHRKYMLLHKKIHVDIKSYSCEFCSKLFKCTSHVRKHTRRLHLNPVEFHNVKYTMFTCDTCKKSFNTKKSVAKHIKTHFATKDLPCGICDKLFKSNSDVNRHLKRVHMKGIIVRQTENAETITKTVNTVKVNSEDYTNDALKNIEFTEKVLANTKYTVKALEITEYTDEVPRSEDYRLETLGSSEYLLEMLENTEYTLEALKSTEHIDEELCNTDFIEEALISTDYSKEASTCTEFTQEALRNTEFTEDATSIGNTDKTLQNTKLETVFGSINNIELGKPLENIAATVKALRNTDILKDAMKISDFTMEDLGITEDAVKSTKSEEAVGSTDIGDTFLDIQCTTEAPIDIKFADKALGATDIIKDAIAISDFTIEDLAITEEAVETTKSKDALHSTVIIETLKNMKCVKEVTEEKEFANIPIRDPEFTNKLRHKDIIKEAIEISDFTMEDLEIPEHAENTVVSAGSAKEAIESIPMNTFECPADTEETIKDTDFMESTDKVHGNTDIIKEAIDSVFTMEDLKIAEETVEKIIPKEILESTEITDKALSSRDIMEALGSTAIAREAPGDEFADEVLENIEFRENALDNTDIIKNAIENSDFSIENLGLTKYTDDALDPTGYTMEDLGINECPEVLGSTDFEDALCSTEFGKKNGDIEFAEVLRSADFTDSTLGFIEEALGSTIIENEAPADIEFTEKVLENTELSAKDLVSTDFLEEALKRTDFTEEALRSTELEEDLGGTDFIEALANTDCFKNAPNCTDFTDSVIGNDIIKEAEFTIDDLGITGYTGNILSTDYNMDEMKVTECPEALDIELLNCLKCGIDFKNDVDLHTHLCGGEMTLFLDFQDM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072840;
- 90% Identity
- iTF_01072840;
- 80% Identity
- iTF_01072840;