Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991062.1:4252145-4267484[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.44 50 6.2 0.1 2 23 119 140 118 140 0.95

2 17 0.034 3.9 9.7 0.2 2 23 144 166 143 166 0.88

3 17 0.083 9.6 8.5 1.4 2 23 402 424 401 424 0.95

4 17 0.015 1.8 10.8 0.0 1 21 432 452 432 453 0.95

5 17 0.061 7 8.9 1.0 3 23 464 484 463 484 0.96

6 17 4.8 5.5e+02 2.9 0.6 1 12 500 511 500 523 0.71

7 17 0.0049 0.56 12.4 4.2 1 23 532 555 532 556 0.94

8 17 0.35 40 6.6 0.3 2 23 631 653 630 653 0.85

9 17 5.7e-05 0.0065 18.5 1.8 1 23 687 709 687 709 0.97

10 17 2.3e-05 0.0027 19.7 1.5 1 23 716 738 716 738 0.98

11 17 0.00013 0.015 17.3 2.3 1 23 743 765 743 765 0.96

12 17 0.012 1.4 11.1 2.3 1 23 771 793 771 793 0.97

13 17 4.8e-05 0.0055 18.7 1.1 1 23 799 821 799 821 0.94

14 17 0.00049 0.056 15.5 2.6 2 23 828 849 828 849 0.98

15 17 0.00054 0.062 15.4 0.6 2 23 858 880 857 880 0.97

16 17 0.0005 0.057 15.5 0.1 1 23 885 907 885 907 0.98

17 17 0.081 9.3 8.5 3.9 1 23 913 936 913 936 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.44	50	6.2	0.1	2	23	119	140	118	140	0.95
2	17	0.034	3.9	9.7	0.2	2	23	144	166	143	166	0.88
3	17	0.083	9.6	8.5	1.4	2	23	402	424	401	424	0.95
4	17	0.015	1.8	10.8	0.0	1	21	432	452	432	453	0.95
5	17	0.061	7	8.9	1.0	3	23	464	484	463	484	0.96
6	17	4.8	5.5e+02	2.9	0.6	1	12	500	511	500	523	0.71
7	17	0.0049	0.56	12.4	4.2	1	23	532	555	532	556	0.94
8	17	0.35	40	6.6	0.3	2	23	631	653	630	653	0.85
9	17	5.7e-05	0.0065	18.5	1.8	1	23	687	709	687	709	0.97
10	17	2.3e-05	0.0027	19.7	1.5	1	23	716	738	716	738	0.98
11	17	0.00013	0.015	17.3	2.3	1	23	743	765	743	765	0.96
12	17	0.012	1.4	11.1	2.3	1	23	771	793	771	793	0.97
13	17	4.8e-05	0.0055	18.7	1.1	1	23	799	821	799	821	0.94
14	17	0.00049	0.056	15.5	2.6	2	23	828	849	828	849	0.98
15	17	0.00054	0.062	15.4	0.6	2	23	858	880	857	880	0.97
16	17	0.0005	0.057	15.5	0.1	1	23	885	907	885	907	0.98
17	17	0.081	9.3	8.5	3.9	1	23	913	936	913	936	0.97

Sequence Information

Coding Sequence: ATGTCTTCAGACGAGTCTGACGATGAGCCACTCGCCATTATAGCTGCTGCGAAGAAGCTGAATCCGGAGAAATTCGAGGGACTTACCATCGAACTTTGTAAAGATGAACCGGctaagaaaaagaagaaaatcatcCCCACCAGGAAAATGAATACCATGACGATTAAGATCAATCGTGCGTTGAAAGCAGTGATAACTCCTCCAGTTGTGCCAGTTGTGGAGAGGCCCATGGACGTGTGGCTGTACCTGAAAGACCTTAATCCAACAGGACCATATAGTTGTTTGCTTTGCCCGGATTGGTTCATCAACAGGGGCAAAATGATTTTACACTACGTGCTGAATCACAAGAAAGACTACTGCGGTATCTGCAGATACTTTGTACCTGATCGAGAAACTTGGCAAGCCCACCTAAAATTCCATGTGCCATGGCCCTGCTCTCAGTGTGTTCAGAACTTTGACACTCAAGCCCAGCTGCGACAGCACTTTAGTGCTGAGCACAACCTGGTCCACTGCCGACTCTGCCACTTCCGAGTACCTGACGATGACCAGTACAATACACACCTAATACAGAAACACAGTGTCTCAAACTTGTCTAGCAAAGATGAGGATACACTATGGGAATTTGAATACGAAGGCAGCAATAAATTCCTTTGCTTACTATGCTCAAAATCGAATAACTTATGCACAATGTTCTTCAATCATTACATGGGATATCACCACTATACACTCAAATGCCTTAGCAGCATACTTTCTGGTAGAGACTTACCATTTGTCATCAGTGGTGCTGATGTCAGTCCTCAGTTTATTGATGATCAACTTAAAGATCACACCAGAGTTGGTTATGTAGACTTGCAAACACCTGCGGAAAATGTGAATGAAGTTCATAGTGAAGATGAGTCACAGGATATATTGAAAGTTTTGATACCGGAAATTAAGCAGGAAGCTGTGAGTGAACCGGATGAGACAGAACATGGAGCTGACAAAGaagagaagaagaaaaaagtcagAGATGAAAATGACATTGCAAATGTCTATAAAGGTGACGAAGACTTTGATGTCACATTAACAGAGTTAATCATTTTACAAAAATGCTACTTTGAATATGTAAATCAGACACTAAATGACATGAACTCTAACTTGGTTCCTAAAGTATCTGATATAGACTATGCAACAGCAAAACCTGATTTACCGTCAACAGATATACCATGTTCTCTTTGTAAAAATAAGTTCAATAATGTGCAATCATTTACATCACACATGACTAAGAGTCATTTGATGAAAACAGCACCAATATATTCCTGTAGGGTATGCACAGCTACATTTGAGAACCAGGCGGAGTTGGATAGTCATGTGAGAGTAGAGTTAGGAGACTTTGAGGATCTGTGGCTTTGTCAGTTTTGCGAGAAAGAATTTGATAATAGGGAAGAGACAAGGAAGCACCTATCTGAACACTGGGAGGTTATGGAGTTTGACAACTGTTTTAGTCCGCACTTAGGCTTCAAATGCAAATATTGTCCAACTCTGTTCTGGAACGAGACAGATAGAGAGACGCATGAAGTGCGCACACACTTCAGCATGCATACAGACCAGTTTTATAAATGCGAAGATTGCTCGGAAACTTTCAGTGATAAGGTTTTCTTCATCCACCACTACATTGAGAAGCACCACAGCCCTGACAGCCCCACATACCTGGTTAAGTGCAGTGTCTGCTGCATAGTCCGTCCCAGCATTGAGGAGATGAGGGCTCACTTCGAGGGCAAGCACCCGGAAGCGAGGAAGGTGTTCTGTTCCATGGACGGGTGCCAGTACCGCCCGTTGAGCCATCGGAAGTCATTCAAGTTCCATTTAAGGACGATCCACGATCCAACGGCGCGGCCGCAGCGCTCTGTTTCTTGCACCGTCTGCGGACGCGACTTCGTCAGCTCCCGCGCATGCGGCGCGCACATGGCGCAAGTTCACGGCCCGGGCAAGTTCAAGTGCAAGTTATGTCGAGAGGTCATGCATACGTTGGACGAGAGAAAACTCCACTACCTGATTCGTCACCCGGGCCGGCACCCGTTCGAGTGCTCGGAATGCGGCAAATCCTTCCAGTACAAGTCGTCGCTATACATGCACAAACAAGAGCACTCGCCCAACAAACAGAGCTATACTTGCTCCTATTGCTCTAAAGTGTTCGCGAAACGAGACTCCTTCCGCGAGCACCTCCAAATCCACGAAGGGCCTCGCCACGCATGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCGAACATGTTGCGTCACGAGCGCCGTCACACCGGCGAGCGACCGTACGCGTGTGCGCACTGCCCGCGCACGTTCGCGGACAAGGGCGCCTGCACGTCGCACTCCAGGACACATTCCAAAGACACTTCATACGCGTGCATCTATTGCGGCCAAACGTTCGTCCAGAAATCAAAACTTACATATCATATTAGAAAACACACGGGGGAAaACTTGGAGACTTGTACAATCTGTTCCAAATTGTTTACTAGTGCTTGTTCCTTGCGCGAACACATGAAAATTCACGAGGCGAAACAGAAGGAGGCGGTTCAGTGTCCCCTGTGTGATAAGAAGTACCAAGACGAGCGTTACATGCTCCGTCATCTCCGAACTTCGCACACTCGCAGCTCGTTCCCATGTCCTCTGTGTGACAAGGCCTTAACAAGTATGGCCGGCTTGCGACACCACGTGCTCACTCACAGCGACGTCAACACTTTCCGGtgtaaatGCTGCCCAAAATCCTATGCCGTGAAGCGTTCGGTAATAAAGCACCTCAGAAAACGTCACGGACTGAAAGGCTCAGAGATAAACCTAAAAGACTATTTTAGACGCGTCGACCCTCGCGACTGTCACCTAGCCCTAGACGACGCAGCCATGACCAAAATATTCGGACCACCAAAGAAAACCATGAACGACATATTGATGGGCGATTTTGTCACGCTCACCAAAAAGTTAACATTTACCGGTAACCAGAATGACGTTGACGGTAATGATGACAGTAATGACACTAATGACGACGAGGATGACGGTAATGACAATGAGCATTCCGATGATGGTAATGATGTGACAACAGAGGAAATAAATACGGTGATTATTAAAATAGAAAAGAATGATGGGGATGAATTGGAGCCGACTGATTTTGTTAGCGTTAAAGTTGAGCCTATGGATGAAGACGAGGCATCAGATTAG
Protein Sequence: MSSDESDDEPLAIIAAAKKLNPEKFEGLTIELCKDEPAKKKKKIIPTRKMNTMTIKINRALKAVITPPVVPVVERPMDVWLYLKDLNPTGPYSCLLCPDWFINRGKMILHYVLNHKKDYCGICRYFVPDRETWQAHLKFHVPWPCSQCVQNFDTQAQLRQHFSAEHNLVHCRLCHFRVPDDDQYNTHLIQKHSVSNLSSKDEDTLWEFEYEGSNKFLCLLCSKSNNLCTMFFNHYMGYHHYTLKCLSSILSGRDLPFVISGADVSPQFIDDQLKDHTRVGYVDLQTPAENVNEVHSEDESQDILKVLIPEIKQEAVSEPDETEHGADKEEKKKKVRDENDIANVYKGDEDFDVTLTELIILQKCYFEYVNQTLNDMNSNLVPKVSDIDYATAKPDLPSTDIPCSLCKNKFNNVQSFTSHMTKSHLMKTAPIYSCRVCTATFENQAELDSHVRVELGDFEDLWLCQFCEKEFDNREETRKHLSEHWEVMEFDNCFSPHLGFKCKYCPTLFWNETDRETHEVRTHFSMHTDQFYKCEDCSETFSDKVFFIHHYIEKHHSPDSPTYLVKCSVCCIVRPSIEEMRAHFEGKHPEARKVFCSMDGCQYRPLSHRKSFKFHLRTIHDPTARPQRSVSCTVCGRDFVSSRACGAHMAQVHGPGKFKCKLCREVMHTLDERKLHYLIRHPGRHPFECSECGKSFQYKSSLYMHKQEHSPNKQSYTCSYCSKVFAKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACAHCPRTFADKGACTSHSRTHSKDTSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKIHEAKQKEAVQCPLCDKKYQDERYMLRHLRTSHTRSSFPCPLCDKALTSMAGLRHHVLTHSDVNTFRCKCCPKSYAVKRSVIKHLRKRHGLKGSEINLKDYFRRVDPRDCHLALDDAAMTKIFGPPKKTMNDILMGDFVTLTKKLTFTGNQNDVDGNDDSNDTNDDEDDGNDNEHSDDGNDVTTEEINTVIIKIEKNDGDELEPTDFVSVKVEPMDEDEASD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411840;
90% Identity: iTF_00289985; iTF_00659714; iTF_00656536; iTF_00660602; iTF_00654632;
80% Identity: -