Nudd048080.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:5935263-5953553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.36 42 6.5 0.5 1 23 241 263 241 263 0.95 2 15 0.021 2.4 10.4 0.1 2 23 292 314 291 314 0.93 3 15 2.7 3.1e+02 3.8 0.1 6 23 339 357 335 357 0.94 4 15 0.00086 0.099 14.7 2.1 2 23 363 385 362 385 0.95 5 15 0.0038 0.43 12.7 0.8 1 23 390 413 390 413 0.96 6 15 0.25 29 7.0 0.1 2 23 416 438 415 438 0.95 7 15 0.016 1.8 10.8 1.6 2 22 445 465 444 465 0.94 8 15 0.004 0.46 12.6 0.3 1 23 526 549 526 549 0.95 9 15 0.049 5.6 9.2 0.6 3 23 623 645 621 645 0.95 10 15 0.0008 0.091 14.9 0.6 3 20 652 669 650 673 0.90 11 15 0.012 1.4 11.1 0.3 1 23 678 701 678 701 0.97 12 15 0.0012 0.14 14.3 0.4 2 23 707 729 707 729 0.94 13 15 5.6e-05 0.0064 18.5 4.9 1 23 733 756 733 756 0.97 14 15 0.00025 0.029 16.4 0.6 2 23 763 784 762 784 0.96 15 15 0.0056 0.64 12.2 3.2 1 23 790 812 790 812 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCGATGAAATTGTAGTAAAAGAGAGCCCCGGCTTGTGCCGGTGCTGTCTTTCTGAAGGATGCTACAAAGACTTGGGTTCAGAATATAGTTGGATGAATGAGACTGAAATTTACGCCGATATGTTACTGGAATGCTTTGATATTAGTATATCCCAACATCCCACGGGCCCCAATGGCTCCAACCGCCTCATCTGCGAAGTATGCATCACGCGGCTGcgggacgcctgcaacttcaagAAGCAGGTGCTGGAATCGGAGAAGAAGTTTGTGGACTTGGTCGGTCGCGGGGAGTTCAGGCCCAAAGTCCTGCTGTACCAGCCACAGATGAAAACGGAGCTGACCATGGAACTCGTGGAGGAGACTGGCGGAGATGACGGAGGCGAGGTGGAATACCTTGAGGAGGATGTAGACTTTGTTGATGAGGACCTCCTCAAAAACGAAGACTACGCCGAAGCATCCGTCTCTGAAGACATCACCGTCTCCGCCTTGGCCGTTAAAGGCAAGCGAGGGCGGCCAAAGAAGAACACGGCCAAGGCCGAGAAGAAGGCCAAGGTGGCCAAGCTCGAGGAGAAACCAAGCAAGTCGAAGGCGGTTGCTAAAGATGTAAAACCGCGGCAATACAAAGGCTGCGAATCGTCTTCGATGCGCAGACGAAAGAACCTCACAATACTGTTCAACAACACCACAATCATACCCTTCAAATGGAGGGGGAAATATCTCTGCTTCTATTGCAGTAAAGACATTGCCGAATATCCCGCCCTCCGAAAACATACCAAGTCCCACGGGAATTGTTCTACCCGCGACCATTCTTTAAAAGTTCTCAAAGGAGGCCAGAACATGGAAATCAAAATCGACATATCCGATATCACTTGCGAAATCTGCAGCGAACCTTTTACTACCTTCGATGATATCATCACTCACCTATTTGTTAAACATAAGTTAGAGTATGACAGAGGCGTGGAAATGGCCATAGAGGAATATAGGCTAGTGGATCTTAGTTGTATAGCTTGTGACGAGAAATTCGCGTACTTCGGTTACCTAGTCTCACACGTTAACAATAGCCACCCCAAAAACTGCCTAATCTGTGATAAGTGCGAGCAAAAGTTTAATAAGAAACGAGATCTCTTCTCGCACATGAAGAACTATCATAGGGAAGGAGGCTACCAGTGCGAACTTTGCCCTTTAAGTTTTAGCTCTCTAAATATACTTAGGAAACATAGGAATAACCGTCATTTGACTAGGTGTAGCATTTGCCAACTGAAACTACCTTCAGCGGCTCTAAAACAAAAGCATATGGAAGTTGAGCACCCGGATGATGGCTCTCTGCAGTGTGATAATTGCTTCAAAGAGTTCCACACAAAGCAAGGTCTCCGCATGCATGTTAGAAAGTGCAAAGGTGAAGATGAACTGTTCAATTTAGAAATAAGGAAAAAAGACTACGACCCTATGGACCTTGATCAGAATTATGAAGACCCTGTTAAAAGGCCGAGCGTCAAACAAATAAGGGAGAACATAGTCATAGTTATAAACATGTCAACGGCTATACCGTTTAATttctataaaaacaaatttaactgcTTCTACTGTTCCAAAGACTTTCCCGATTCAGACTTAATGCGGGAACATACTATAATAGAACATCCGACGTGTGACGTAAAACAGAAATGCATTAGAAAGTGTAGGGAGTCTGTAGCTTGCGTCAAAATAGACATTTCTTCCCTAGCATGTAAATTATGCTTCGAGTCCCTGCTAGACTATCTAACTCTTATAGACCATCTAATCGTAAAACATGATGCAAACTACGACAAATCTATAACGACCTGCTTACAACCATACAGGCTAATAAAAGATCATATGGCCTGTCCTCATTGTCCAGGCGAAGTCTTTCGATTCTTCGGTACCCTGTTAAAACACATGAACAACAAACATACTAACAATAACATTATTTGCGTGTATTGCGGGCAGACTTTTAGGCGCGATCAGAACTTACGTGTTCATATATGGCGTCACCATAGGGACGGTAGATTCAAATGTAACATTTGCGGTGCAGAATGTAATATACCTTCTAGGTTATACATGCATATGGCTAGAGCTCACGGAGTCAAAGCGGCTAAATGTCCTAAATGCTCAGAGAGTTTCGCCACACAGTACTTGAGACAGAAACATCTGATAGAAGCTCATGACTCGGGCCACAAGTGCACGTATTGTGGGAAATTATTCACTAGGAACTCCTTCATGAGGGACCACATAAGGCGGACACATCTAAAGGAGAAAAACGTTGAATGCTCCATCTGTAATATGAAGTTCTTTAACAATATTCTTCTCAGACGTCATATGGTGAAGCATAGCGGTGAGAAGAATTTCCACTGCGACATTTGCGGCGAAAGATTCTTCTGGAGGAAGAGCCTTCGAACGCATATGTCGAGGCATAATAAGCATATTAATCCTGTACATATTTAG
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMNETEIYADMLLECFDISISQHPTGPNGSNRLICEVCITRLRDACNFKKQVLESEKKFVDLVGRGEFRPKVLLYQPQMKTELTMELVEETGGDDGGEVEYLEEDVDFVDEDLLKNEDYAEASVSEDITVSALAVKGKRGRPKKNTAKAEKKAKVAKLEEKPSKSKAVAKDVKPRQYKGCESSSMRRRKNLTILFNNTTIIPFKWRGKYLCFYCSKDIAEYPALRKHTKSHGNCSTRDHSLKVLKGGQNMEIKIDISDITCEICSEPFTTFDDIITHLFVKHKLEYDRGVEMAIEEYRLVDLSCIACDEKFAYFGYLVSHVNNSHPKNCLICDKCEQKFNKKRDLFSHMKNYHREGGYQCELCPLSFSSLNILRKHRNNRHLTRCSICQLKLPSAALKQKHMEVEHPDDGSLQCDNCFKEFHTKQGLRMHVRKCKGEDELFNLEIRKKDYDPMDLDQNYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTIIEHPTCDVKQKCIRKCRESVACVKIDISSLACKLCFESLLDYLTLIDHLIVKHDANYDKSITTCLQPYRLIKDHMACPHCPGEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMARAHGVKAAKCPKCSESFATQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKSLRTHMSRHNKHINPVHI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013343;
- 90% Identity
- iTF_00010459;
- 80% Identity
- -