Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991076.1:6938172-6948287[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.6e-05 0.0018 20.2 7.0 1 23 140 162 140 162 0.97

2 15 8.1e-06 0.00093 21.1 4.5 1 23 168 190 168 190 0.97

3 15 0.014 1.5 11.0 4.1 1 23 196 218 196 218 0.98

4 15 1.5e-06 0.00018 23.4 1.6 1 23 224 246 224 246 0.98

5 15 7.7e-06 0.00089 21.2 5.5 1 23 283 305 283 305 0.97

6 15 0.00081 0.093 14.8 4.7 1 23 309 331 309 331 0.98

7 15 3e-05 0.0035 19.3 1.3 1 23 338 360 338 360 0.98

8 15 0.0041 0.47 12.6 5.1 1 23 366 388 366 388 0.97

9 15 2.3e-06 0.00027 22.8 0.3 1 23 394 416 394 416 0.98

10 15 3.6e-05 0.0041 19.1 7.2 1 23 423 445 423 445 0.97

11 15 3.9e-06 0.00045 22.1 4.2 1 23 451 473 451 473 0.98

12 15 1.7e-05 0.0019 20.1 0.4 1 23 479 501 479 501 0.98

13 15 6.1e-06 0.00069 21.5 3.9 1 23 507 529 507 529 0.97

14 15 0.00032 0.037 16.1 1.0 1 23 535 557 535 557 0.97

15 15 0.0011 0.12 14.5 5.0 1 21 563 583 563 586 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.6e-05	0.0018	20.2	7.0	1	23	140	162	140	162	0.97
2	15	8.1e-06	0.00093	21.1	4.5	1	23	168	190	168	190	0.97
3	15	0.014	1.5	11.0	4.1	1	23	196	218	196	218	0.98
4	15	1.5e-06	0.00018	23.4	1.6	1	23	224	246	224	246	0.98
5	15	7.7e-06	0.00089	21.2	5.5	1	23	283	305	283	305	0.97
6	15	0.00081	0.093	14.8	4.7	1	23	309	331	309	331	0.98
7	15	3e-05	0.0035	19.3	1.3	1	23	338	360	338	360	0.98
8	15	0.0041	0.47	12.6	5.1	1	23	366	388	366	388	0.97
9	15	2.3e-06	0.00027	22.8	0.3	1	23	394	416	394	416	0.98
10	15	3.6e-05	0.0041	19.1	7.2	1	23	423	445	423	445	0.97
11	15	3.9e-06	0.00045	22.1	4.2	1	23	451	473	451	473	0.98
12	15	1.7e-05	0.0019	20.1	0.4	1	23	479	501	479	501	0.98
13	15	6.1e-06	0.00069	21.5	3.9	1	23	507	529	507	529	0.97
14	15	0.00032	0.037	16.1	1.0	1	23	535	557	535	557	0.97
15	15	0.0011	0.12	14.5	5.0	1	21	563	583	563	586	0.95

Sequence Information

Coding Sequence: ATGAACGCACATTCGTGTCGCTGCTGCCTGCAGCGGCCTCCGGACAAGGGTCTTGACACGCTGTACACGCATCAGGGGAAAGCAGAGATATATTCAGACATGCTGCGGGAATGCTTCGATATACATCTGAATTCAGCTAATGGCGAGTGTGGGATCTGCGAGGTGTGCGTGGGCCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAGGTGCAGCGCAGCCAGGTGGAGCTGCTGGCGAAAATGCAAAAACCTGGAAATACCCGGAGCGACAATGCTCACAAGCCTGATGCTGAGGCAAAGCATCGGCATGAGTCGGAGAAAGATTACAGAGACGAGGCGGCAATATtggCAACATTCAGCACACCGACTTCGAAGACTCAGGCCGACCCAACCCCAGCGCGTGGCACGGGCGTAGTCCACACCTGCGATATATGCCACAAATCGTTCGATCACCAATCAGCGCTCAAAAACCACCGGCGCCTTCACACAGGTGACAAACCTTTTTCGTGTAATGTCTGCCACAAGAGATTCTCACAAAAAGGCAACTTAACCGCCCATTTCAAATATCACATGGGCGACTATCGATACTTCTGTGAAGTATGCAATAAGAGATTTACAGAAAAGTGCATCATGGTTAAACATATGAAGACACACACTGGAGAAAAGCCTCACACTTGCGATATATGCGATAAAAAATTTGCACTAAAAAGTTATTTAGCCGTTCATATGAAAACTCATTCGAAATACGAGAATAACAAAGAACATACAGACGAAACTCCCGAAGAAGACACAAAAGAATCTAACTTGAGTACAGATGAAAAAGATGAGAAGACTGAAGAAACCTTTCACGAATGCAAAATATGCAACAAACGGTTTGCACAAAAATGCAACTTGACTGCCCATTTAAGATATCACACACCGCGGTTCTCTTGCGATCAATGCGACAGGAAATTTGTATGTAAGTCTCACTTGAATGCCCATATACTTCGCCACGCGGGAAGCGAGGCGATTTACCCGTGCGAGGTATGCAATAAGCAGTACAAATCGAAACGTTCTCTAAACCTTCATCTAACAACTCACACGGGAGACTATAAATACTCTTGCAATGTGTGCAATAAGCAATTCGTACATAAAGACACGCACACACGACACATGCTCGAACATACTGGAGAAAAGCCTTACGCCTGCGATACGTGCAATAAAGCATTCCCACTAAAGTCCGCTTTGAACCAACATATGCAAACGCATACTGGTGGAGAAAAACTATTCTGTTGCGAAATATGTAATAAACGATTTTCACATAAGAATTATTTAAGTAAACATATGGATACGCACATAGGAAGAAAGCCATTCATGTGCGAAATATGTAGCAAAACGTTTACGCACAAAAGCACGTTAAAAGCTCACAAATCAACACACACTGGAGAAAAACCTTATTCCTGCGAAATATGTCAAAAGAGTTTCCGTCTGAGCAGAGGATTAAGGGGCCACATGATGATTCACGATGGGGTCAAACAACACATTTGCGAAGTCTGCAGTAAGCAATTTAGACATAAATCCGCTTTAATGGTTCACATGCGACGGCATACAGGACAAAAACCGCATTCTTGTGATGTGTGTAAAAAGGAGTTTATAGTTCTAGCTGAGTTAAGAATGCACTATCGTAGTCACACTGGTGAAAAGCCGTATATGTGTCAAATATGCCATAAGAAATTCGCACGGCCTGGACATATACGAAAACATCTTAAATGCGTTCACAACGAGAAACCTTCGAAGTACACATTTACTGTACTCTAA
Protein Sequence: MNAHSCRCCLQRPPDKGLDTLYTHQGKAEIYSDMLRECFDIHLNSANGECGICEVCVGRLRDASDFKLQVQRSQVELLAKMQKPGNTRSDNAHKPDAEAKHRHESEKDYRDEAAILATFSTPTSKTQADPTPARGTGVVHTCDICHKSFDHQSALKNHRRLHTGDKPFSCNVCHKRFSQKGNLTAHFKYHMGDYRYFCEVCNKRFTEKCIMVKHMKTHTGEKPHTCDICDKKFALKSYLAVHMKTHSKYENNKEHTDETPEEDTKESNLSTDEKDEKTEETFHECKICNKRFAQKCNLTAHLRYHTPRFSCDQCDRKFVCKSHLNAHILRHAGSEAIYPCEVCNKQYKSKRSLNLHLTTHTGDYKYSCNVCNKQFVHKDTHTRHMLEHTGEKPYACDTCNKAFPLKSALNQHMQTHTGGEKLFCCEICNKRFSHKNYLSKHMDTHIGRKPFMCEICSKTFTHKSTLKAHKSTHTGEKPYSCEICQKSFRLSRGLRGHMMIHDGVKQHICEVCSKQFRHKSALMVHMRRHTGQKPHSCDVCKKEFIVLAELRMHYRSHTGEKPYMCQICHKKFARPGHIRKHLKCVHNEKPSKYTFTVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00656356; iTF_00658658; iTF_00660530;
90% Identity: -
80% Identity: -