Nudd022042.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905163555.1
- Location
- LR991060.1:3775629-3792441[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.1e-75 2.3e-70 238.9 22.1 1 265 118 376 118 398 0.90 2 12 0.24 1.4e+04 -3.3 3.6 197 246 384 436 368 447 0.53 3 12 0.58 3.3e+04 -4.6 2.7 5 31 560 586 550 640 0.57 4 12 0.58 3.3e+04 -4.6 2.7 5 31 705 731 695 785 0.57 5 12 0.58 3.3e+04 -4.6 2.7 5 31 850 876 840 930 0.57 6 12 0.58 3.3e+04 -4.6 2.7 5 31 995 1021 985 1075 0.57 7 12 0.58 3.3e+04 -4.6 2.7 5 31 1140 1166 1130 1220 0.57 8 12 0.58 3.3e+04 -4.6 2.7 5 31 1285 1311 1275 1365 0.57 9 12 0.58 3.3e+04 -4.6 2.7 5 31 1430 1456 1420 1510 0.57 10 12 0.58 3.3e+04 -4.6 2.7 5 31 1575 1601 1565 1655 0.57 11 12 0.51 2.9e+04 -4.4 2.5 5 31 1720 1746 1710 1801 0.57 12 12 0.15 8.9e+03 -2.7 6.3 119 166 1868 1915 1854 1924 0.48
Sequence Information
- Coding Sequence
- ATGGGGCATCAGACCAAAAGCGCAACACCTGATAATAGCGACGAGGAGAGTGGGGAAGCGTTCACCGACGGAGACTTCGGTGACTCCGATGACGAAATACACATAGATATAGACGTAGAGCGTAGCGATGATTCCAAAACATCCCCTGTCCCTGTAGAAACGGTTAACACGGAGCTCGCAGGCATGGAGGTCGCACACGGCACGCGCAATGGTTTCGAACACGATCATGCTAAAGTTAACGGGCTCAAGACCGACGGCTCGGAATGTGTCGCGATGCCTGAGTTCCGGCGCGACTCGCACGGCGACCAGAACCCTTCCATCGTCGGCATTCTTGGCGGACAACAGGATCATgcggaacaacggCTAGCGGCACgtcgggcggcgcgggcggaggCGCGTGAGATACGTATGCGCGAGTTAGAGCGCCAGCAACGTGAACAGGAAGACCATGCCGACAAAGCCTACGATATGTACGCCGAGACGGTGGGGCGGCGACCGGGAACCCGACTGACGGGGCTGAGCCCCGCGGCGCACCACACGCCGCGGCGCGCCTCCGAGGACTCTGCCGACGACAGCTTCAACGTTAAGGATCTCAGGGGGGAGTTGAAAGAAGTAGAAGAGAAATTCCGAAAGGCCATGATCCTGAATGCACAACTAGACAATGACAAAGCAGCACTGGGTTATCAGCTCGAGCTACTAAAAGATCGTATCGAGGAGCTACAGGAGGAGTACGCGCAGTTACAGCGCGAGCACAAAGAGAAATGCTCCGCCCACGAGCGTCTAAAACGCGAGCACGCGTCCCTCGAACGGGAACTAGGCGCGGCCCGGGACGCGGTCCGCGCGCGGGACGCCGCGGCCTCCGACGCGGGCTACGCGTTCGTGGACGCCGCGCCCGCGGCCAACGGGGACGAGGGGCGGGTGCACACCTTCCCGCCGCTCGCGCTCGTGTCGCACCAGAACGAGAAGCTGCTGAATGACGCGGGAGAAGGGACGCTAGACGTCCGGTTGCAAAAACTGCTGAGCGCGAAGCAGTCGCTAGAGGGCGAGGTGCGGCGACTGAAGCTGCAGTTGAACGAGGAGCGGCACAACGGCGTCGCGCGAGCGCACGATCAGGACCTCGAGTCGGAACTGGAAGCCCTCCGCAAGTCGAACGCGGAGGCGAaggcgcgcgcggcgcgggcggaggCGGAGGCGGCGCTGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTCACATACCACACGCTTGGTTCGCAggcggccggcgcggcgcgccTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAACTCAAGCACGAGCGCAGGAAGCTGCAGCGGGAGGCCCGCGAAGCGCTAAACCGAGTGGAGGAGCTAGAGACGGAAAACAGCCATCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTGCTTAAGGAGCTGTGA
- Protein Sequence
- MGHQTKSATPDNSDEESGEAFTDGDFGDSDDEIHIDIDVERSDDSKTSPVPVETVNTELAGMEVAHGTRNGFEHDHAKVNGLKTDGSECVAMPEFRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRPGTRLTGLSPAAHHTPRRASEDSADDSFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKREHASLERELGAARDAVRARDAAASDAGYAFVDAAPAANGDEGRVHTFPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSAKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSNAEAKARAARAEAEAALQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREVSHIPHAWFAGGRRGAPRRAAAAAQGAGRRPRRRRGATQARAQEAAAGGQSHTTRLVRRRPARRASPRSCSGSRRRPTPATTPRSNSSTSAGSCSGRSVTYHTLGSQAAGAARLAAQLQRLKAQADARDDAEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -