Nudd052228.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991079.1:10681336-10683789[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-10 2.5e-07 31.9 0.0 2 37 11 46 10 50 0.90 2 2 5.9 4.1e+03 -0.8 0.0 21 29 351 359 350 360 0.89
Sequence Information
- Coding Sequence
- ATGGCACCCACAAAAAGGCAAAAATGGGATAAAGATTCAATGGCGATGGCTATATTGGCTGTACAGGAAAAGAAAATGGGATTTTTAAAAGCGTCTAAAACTTTTGGTGTACCAAAAACGACTCTTATACGATTATGTCAAAAAAAAGTAGTTATGGGAATAGAGGACGTGACAAACATTAAGTTGGGGAGAAAAGCAACATTTCCAGCCAAATTAGAGGCTGATTTGGCAGCATATGTACTTGAAATAGAGGCATTGGGTTTTGGATTAACTAGGAGAGACATCAAATCTTTAGCCTTTCAATTAGctcaaaaaaataacttaagcCATCCCTTCTCTAAAGAAAaccagactgctggcagaacGTGGCTGCGCTTATTTTTGAGACGCCACCCAGAACTCTCTTTTCGGCAGCCCACTGGAACATCTATTGCGAGATTAAAAGGCTTTAATAAAGAAAGTGTTCATGAATTTTATAGCTTATTAGAAAACGCAATGGACAAACACAAATATACTCCAAACAACATCTACAACGTCGATGAGACAGGAATATCAGTTGTGCCTAATAAAATGCCTGAAGTGTTGGCGCAGAGAGGCAAAAAATCGGTCGTAGCCACCACATCTGCTGAGCGAGGTGCTACCATTACATGTGTTATGTGTATGAGTGCTGGCGGTTCATTCATTCCACCGATGATGATTTTCCCCCGCAAACGAGACCATCCTCTATTGATGAAAGGAGCCCCGCCTGGTGCTATACATGCGTGCCATCCATCCGGCTGGATCCACACCGACCTATTTACGAAATGGTTCAAGCACTTCTTACAGCATGCAAAGCCATCCGAAGCTTCTCCACTACTCTTGATTTTAGACGGTCATGCTAGTCATACACGGAACATCGAACTAATAGATTTAGCACGCGAAAACCACGTACAACTGTTGTCTTTACCGCCACACTCCAGCCATAAAATGCAGCCTCTTGACCGCACTTTCATGGGTCCACTAAAAAAATACCTGACTGAGGAAATTCGACAGTGGATGCGAAATAAAACACAAGCAGCTACACAGTACGACATTGCAGAACTGTTTGGACGTGCCTACATAAGAGCACAGCGAGCTGAGCTTGCTATCAATGGCTTTCGTGTAACCGGAATATGCCCATTAGACAGAAACGTTTTTCAAGACCACGATTTTATTGATGATGAGGCAGAGCCGGATAAAATTATTCCCTCAAATATCAACACGAGTCAAGATCAAGCAATAATTAGCGAATCCCAAGATGTGCATAATAGTCATCCCCAGAGTGATGCACTACAATCAGTCAATATGTCCCAACCGATCACTTTAACCAGAGATCAACAATCTGACCATAATCTAATTACGATCCAAATTAAGGAACCcgatgttcttaataaaaaccAGGATCAAAGTGAGCCATTAACGTCAGTTAATGAATCCCAACTGACTGCTGTAAATCAACAACATGAGCATGATTTAATATTGACAGATAATATTCGTCCTACAACTTCTCACATTCAACAAGCGGACCTGATCCAATTCCTAACAATTACCAAAGAACGTGAAAATGAAACCCAGAGTGCGGCAGCGGGAATCAAGGCTATAAATCAAGTCCAGACATTGGCTCAGTTGGCATTAGCTGTAATTTTGCTTGAAGATAAGTCATTTGTCGCTGCAGAAGATATTTATAATGAAGACAAAATTTCCCAGGATGCTACACCGCTTAAAGAGACATCTAATGAGCCAGAAGTATTTGCTAGTCCATCTACGTCTACTTACTTTTCTCCAAAGCAGCTATTTGATGTACCACGACTTACTAAAAAATCTAGTAACAGGGGAAGAAAGAGCAGTAAATCTACAACGTTAACATCGTCACCgtacaaattaaatttagaaacatcaattaaaaaaaaagaagaagcagagtttttgaaaaaaacacgAAATGTAACAAAAGAATTAAAGGAATCTAAGAAAAAAGAAGAACAAAAGAAAAAAGCTGAACTAAAGAAAAAAGCTGAACTAACGAAAAAAGCTGAACTAAAGAAAAAAGCTGAACCTAAAGAAAGAATGAAGAAAACGGATAAAGAACCTAAAAAGACAAATGCTTCAAATAAACAGGAGGAAACGAAAAGTAAGACTGCGTCTAAAAGAAAACCAAAAGAAAAGCAAAAAGGAACTAAAAAGACAGCTCAAAAGAAAAGGAAGACTACAAAAAAGGGCCTACCTTCTAGTTCCGAAGACGATGATTTTTCAGTAAATGATGACACCGATGAAAGTGATAATGAAAATGCTAAATGTCTTTATTGTTACGGTCTCTTTTCAGATGACACTCGTGGAGAACAATGGATACAGTGTCCATCGTGTCAGCGATGGGCACATGAAGAATGTGCTGGTGTCGATAGCACTTCATTTTTGTGTGAATATTGCCATAATTAG
- Protein Sequence
- MAPTKRQKWDKDSMAMAILAVQEKKMGFLKASKTFGVPKTTLIRLCQKKVVMGIEDVTNIKLGRKATFPAKLEADLAAYVLEIEALGFGLTRRDIKSLAFQLAQKNNLSHPFSKENQTAGRTWLRLFLRRHPELSFRQPTGTSIARLKGFNKESVHEFYSLLENAMDKHKYTPNNIYNVDETGISVVPNKMPEVLAQRGKKSVVATTSAERGATITCVMCMSAGGSFIPPMMIFPRKRDHPLLMKGAPPGAIHACHPSGWIHTDLFTKWFKHFLQHAKPSEASPLLLILDGHASHTRNIELIDLARENHVQLLSLPPHSSHKMQPLDRTFMGPLKKYLTEEIRQWMRNKTQAATQYDIAELFGRAYIRAQRAELAINGFRVTGICPLDRNVFQDHDFIDDEAEPDKIIPSNINTSQDQAIISESQDVHNSHPQSDALQSVNMSQPITLTRDQQSDHNLITIQIKEPDVLNKNQDQSEPLTSVNESQLTAVNQQHEHDLILTDNIRPTTSHIQQADLIQFLTITKERENETQSAAAGIKAINQVQTLAQLALAVILLEDKSFVAAEDIYNEDKISQDATPLKETSNEPEVFASPSTSTYFSPKQLFDVPRLTKKSSNRGRKSSKSTTLTSSPYKLNLETSIKKKEEAEFLKKTRNVTKELKESKKKEEQKKKAELKKKAELTKKAELKKKAEPKERMKKTDKEPKKTNASNKQEETKSKTASKRKPKEKQKGTKKTAQKKRKTTKKGLPSSSEDDDFSVNDDTDESDNENAKCLYCYGLFSDDTRGEQWIQCPSCQRWAHEECAGVDSTSFLCEYCHN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009936;
- 90% Identity
- -
- 80% Identity
- -