Nudd030644.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991064.1:6921620-6939514[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 7.3e-08 33.6 0.0 4 39 188 224 185 228 0.89 2 4 9.8e-11 6.7e-08 33.7 0.1 2 39 240 277 239 280 0.92 3 4 4e-14 2.8e-11 44.6 0.0 2 45 295 339 294 339 0.96 4 4 1.2e-18 8.5e-16 59.0 0.0 1 45 346 391 346 391 0.97
Sequence Information
- Coding Sequence
- ATGCCCGGTCGCGGTCTTCCGCAGGTCAAGCACGAACCGGCCTCCGAAGACGACGACTCGCAGTACGCACACGGCTTTTTCACCAATCAGGTATCGTCGCTGGAGCTCCGTGCGGTGAAACTCGAGGTCGACATAGACGACAATGCGTCTGCGCACATATTACGACACCTGCAGGGTACGGAGAGTCTGGAGGAGCTggcgccgccggcgccggcgggcCCCGCCGCTACCCCAGTCTCCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACCTTGGCGCCGGCGCCGCACTTGGATACACTGGAGCCTGCCGTCACGCTCAAGACCCTGGCGCCCGCGCCGCACTCGGATACACTGGGTGCCATGCTCATCGATAGACACAAGACGCTGCCCGGAGCAAACGACGCCGATTCCATGGATTTCATGCCTCTCCTTACTGTTAAAGACGAGCCTCTCTCTGAAGGAGAGCAACACCACCTGAGTGGGTCAGATACGAGCGACTCCAGCACGCAGCCCGAACGACGCGGTAGCCCCAAGAACTGGACGCAGCAAGACATGGAACTAGCACTAGAGGCACTTCGGACACACAACATGAGCCTCACTAAGGCATCAGCGACATACGGCATTCCATCAACGACGCTGTGGCAGCGCGCGCATCGGCTTGGCATTGACACACCCAAGAAAGAAGGCGCTTCCAAGTCCTGGAGTGAAGCTGATCTGCGGGGTGCGCTGCACGCCTTGAGATCTGGAGTCATTTCTGCCAACAAGGCTAGCAAGGCTTATGGTATACCCAGCAGCACCTTGTACAAGATCGCGCGTCGCGAAGGCATTCGTCTTGCGGCTCCGTTCAACGCGGCTCCTACAGCGTGGCGGAGAGCCGACCTAGAGCGAGCGCTCGCTTCCATCCGCTGTGGAGCCGCCTCGGTGCAACGGGCGGCTTCACAGTTCGGGATACCGACCGGAACGTTGTACGGGCGGTGCAAGCGAGAAGGGATCGAGCTGTCTCGGTCCAACCCTACGCCCTGGTCAGAAGACGCCATGGGAGAGGCTTTGGAAGCTGTCAGGGTTGGCCAAATGTCGATAAACCAAGCTGCGATCCACTATAATCTGCCTTATTCGTCGCTCTACGGACGGTTCAAGAGGTGTAAATATCAAGTAAGCAATCTGAGCCCTCAAGCAATACCTCAGCAGTCCATGCCAGAAATGGAGATGGAACAGCCACCACAGATGTACTACCAGCATCAGATTCCGACAATGCCAGAAGAGTATCATCAGAGCTACATGGCGGAGCCAGACATGCACGCTAGTGTCATTCAGGAGCCTTATGGGATGTACTATCAAGGTTGCAGCAGCAGCATTGCTACCAGCTGA
- Protein Sequence
- MPGRGLPQVKHEPASEDDDSQYAHGFFTNQVSSLELRAVKLEVDIDDNASAHILRHLQGTESLEELAPPAPAGPAATPVSVKQEPAEPAVTLETLAPAPHLDTLEPAVTLKTLAPAPHSDTLGAMLIDRHKTLPGANDADSMDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPERRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRSGVISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVSNLSPQAIPQQSMPEMEMEQPPQMYYQHQIPTMPEEYHQSYMAEPDMHASVIQEPYGMYYQGCSSSIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00659381;
- 80% Identity
- -