Nnoc004286.2
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_958496325.1
- Location
- OY292484.1:15962214-15976194[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.7e-63 2.3e-59 201.7 8.4 1 221 125 337 125 340 0.93 2 5 0.58 8e+03 -3.6 0.0 203 221 372 390 368 391 0.91 3 5 0.58 8e+03 -3.6 0.0 203 221 425 443 421 444 0.91 4 5 2.7e-15 3.8e-11 43.4 0.2 202 266 477 541 465 561 0.85 5 5 2 2.8e+04 -7.6 17.5 1 49 563 610 563 637 0.72
Sequence Information
- Coding Sequence
- ATGGGCAATTTGTCCAAGATGGCTACGCCTGACAATAGTGACGAGGAGAGCGGTGAACCTTTCACAGATGGAGATTTCGGTGATAGCGATGACGAAGTAGTGATTGAACAAAACGAAGACACTGAAAGGTTAATTCTACCTGTGAATGAAACTGTGAACGTAGAAATGCAGAAAGGAAGTGATGCGACCCCGTCAAAGGCCTACGCCAACGGTATAGACAATCAACCCAGAGTAAATGGACATAAAAATGGTGAACTATCTAGTGATACGGAGTGCCGTAGTAATGGTGGTGACAGTGATATAATTCGCAGGGATTCCCATGGTGACCAGAATCCCTCTATTGTGGGCATACTTGGAGACCAGCACAACCATGCGGAGCAGCGgctggcggcgcggcgcgcggcgcgggcggagGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTACGCCGAGTCGgtggggcggcgcggcgggtcgCGGCTGGCGGCGCTCAGCCCGGCCGGCGTGCTGTCGCCGCGGCGCAGCTCCGAGGACTCCGCCGACGACACCTTCAACATCAAGGATCTTAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCAGGAGGAGCACGCGCAGCTAACGCGCGAGCACCGCGAGAAGTGCTCGTCGCACGAGCGCCTGCGCCGCGAGCACGTGTCGCTGGAGCGCGAGCTGGGCGCCGCGCGGGAcgccgtgcgcgcgcgcgacgccgccgccgccgccgccgcgctggtgtTCGCGGACGCGCCGCCCGGCGCCGACGTGCCCGGCTTCGGCGCCGTGCCGCCGCTCGCGCTCGTGTCCAAGGCCGCTGACGACATGCTCGCCGACCTGGGCGAGGGCACGCTCGTGACGCTCGTGTatgacgccgccgccgccgccgccgcgctggtgtTCGCGGACGCGCCGCCCGGCGCCGACGTGCCCGGCTTCGGCGCCGTGCCGCCGCTCGCGCTCGTGTCCAAGGCCGCTGACGACATGCTCGCCGACCTGGGCGAGGGCACGCTCGTGACGCTCGTGTatgacgccgccgccgccgccgccgcgctggtgtTCGCGGACGCGCCGCCCGGCGCCGACGTGCCCGGCTTCGGCGCCGTGCCGCCGCTCGCGCTCGTGTCCAAGGCCGCTGACGACATGCTCGCCGACCTGGGCGAGGGCACGCTCGTGACGCTCGTGTatgacgccgccgccgccgccgccgcgctggtgtTCGCGGACGCGCCGCCCGGCGCCGACGTGCCCGGCTTCGGCGCCGTGCCGCCGCTCGCGCTCGTGTCCAAGGCCGCTGACGACATGCTCGCCGACCTGGGCGAGGGCACGCTCGATGTGCGGTTGCAGAAGCTAGTCAGCGCGAAGACGGGCCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCTCGCACCACGACCACGAGCTGGAGACCGAGTTGGAGGCGCTGCGTCGCGGCGCGGCGGAGGCgaaggcgcgggcggcgcgcgcggagGCGGAGGCGGCGCTGCAGGCCGCGGCGTCCGCCCGCCTCGAGGCGCAGGTGGCCCGCCTGCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGCGAGGCGCGGGAGGCCCTCAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAGCTGAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGNLSKMATPDNSDEESGEPFTDGDFGDSDDEVVIEQNEDTERLILPVNETVNVEMQKGSDATPSKAYANGIDNQPRVNGHKNGELSSDTECRSNGGDSDIIRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAESVGRRGGSRLAALSPAGVLSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLTREHREKCSSHERLRREHVSLERELGAARDAVRARDAAAAAAALVFADAPPGADVPGFGAVPPLALVSKAADDMLADLGEGTLVTLVYDAAAAAAALVFADAPPGADVPGFGAVPPLALVSKAADDMLADLGEGTLVTLVYDAAAAAAALVFADAPPGADVPGFGAVPPLALVSKAADDMLADLGEGTLVTLVYDAAAAAAALVFADAPPGADVPGFGAVPPLALVSKAADDMLADLGEGTLDVRLQKLVSAKTGLESEVRKLKLQLNEERAARQNGVASHHDHELETELEALRRGAAEAKARAARAEAEAALQAAASARLEAQVARLRARQDHQDEHEEALKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -