Nnoc003207.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- PAXBP1
- Assembly
- GCA_958496325.1
- Location
- OY292483.1:14636133-14654654[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.073 1e+03 -0.3 0.0 218 249 305 336 301 347 0.82 2 2 2.5e-14 3.4e-10 40.6 0.0 4 190 506 681 503 706 0.77
Sequence Information
- Coding Sequence
- atgtctcTGTTTCGTAAACCAAAGAAGATCCAACGTCGCATGTTTTGcgctgatgatgaagatgacggcgaccctgaaccgccgccgccgccgatcATCAGCTACGACAAGAAGGAAAACAGACCGGTTAAACCCACCACTCTTTTGAGTTTTGCGGACGAAGAAGAGGATGGTGAAGTGTTCAAAGTGAAGAAGTCATCACAGAGCAAGCGGCTGGCCAAGCGCCGGGAGAAGGAGAGGCGACGTGGTCCTGAcggtgataataataaatatgacaataatattaatgagGACGACAACGGAAACAGCGCAATCGAGGACAAGCCTAAACCGAAGAAGAAAGTGACGCTCGAAGGTCTGATCCTGTCCGGACGAGAGGCGCTAGCGGCGGACGGGGCGGGGGACGTGTCCGACAGCCCGGAGGAAGACGACGAAGACAGTAGAGGGTTCCACCAGTACCGCGCGGAGTCCGTGAGGGCCGCGCTGGCGGTCGCGCCGGGGCACATCCCCGACGCGGCGCTCATCCACGCGGCGAGGAAGACGCGACAGCAGGCGCGTGAGCTTGGCGACTTCGTGCCGGTGACGGCGGAGGTGAAGCCGGGCTCGCGGCTCGTGCGCGACGACGACGGCTCCGGCGATGACGATGAGGAGGGACGCATGCACGTGAGAGGGTTGGACTTGCCCAGTGATAAGCCTAAGCGTGGCACCGCGGCCGCACCCACCAATGAAGAGCTGGACAGCGAAGTGGAAGAATGGGAGGAGCAGCAGATAAAGAAGGCCATGCCTGCCATTGTGGACATAACAGGAGAAGGCCTGGGCGAGCTGAACCCGTTCGCcgtggcgccgccgccgccgcagatCCCCGCCGCGCCGCACCTGCGGCCGCTGGGCTCGGGAAAGCCACCTGCCACTGCTCAGGAGCTGCTAGACGCGCTTAGAGACAGAATGGAGGAGCTCCAAGTAGACCGGGAGAAGACGTCCACGCAACGCACAGAGTGGGTGGCGCGGCTGTCTCGCGCGCTGGAGACGCGCgacctgcgcacgcgccgctgcCCGCAGCTGGACGCCGCGTACCGCCGCGCGCAGGCCTTGCGCGGCTACCTCACCGACCTCATCGAGTGTCTGGACGAGAAGCTGCCGGAGCTGGAGGCCCTCGAAGCTCGCGCGCTGGCGCTGCACCGCTGGCGCTGCGAGTACCTCACCGAGCGGCGCCGCGCCGACGTGCGCGACCAGGCCGACGACGTCATGTACCTCACCgCCCGGCCGGGAGCGGCGCGTCCCCCCGAGTCGGAGGAGAAGCGACGGCGCTGCGCCGAGCGCgaggggcggcggcgcgccaggcGACGCAAGCGCGAAGCCGCAGGGGCTGCTACTGCGCACCAGGACGGAGACTCCAGTGATGACGAGCTGCCGCCGGCGGAGCTCAGCCACTATACACGGGAGAGAGAGGCGATACAAGTGGGCAGTGCTACGTTGTTCAGCGACGCGCTGGCGGCGTGGCGCTCGgtgcgcggcgtgtgcgcgcgcctggcccgcttccgccgccgcgcgcgcgcgctctacgccgacgcgtacgtgcccgactgcctgcccaagctgctcgcgccctacgtccggcatcagCTAATTCTCTGGAATCCCCTAGCGGACGAAGACAACGAGGACTATGAGAAAATGGACTGGTACAAATGTCTGATGATGTACGGAGTCCGGCCGGAGAAGTTATCGAGTGAGTCCTCAGGTTCGGAGGAGGAGGCGGAGGACGCGCCGGCGCTTACTGAGGAATCTGTGAGGGAGGATCCCGACCTGTGCCTCGTGCCTATGCTCGTCAACCGCGTCGTCATACCTAAGCTCACAGAGCTGGTGGAGCACGCGTGGGACCCGCTGTGCGTGCGCGCGTGCGTGCGCCTGCGCCTGCTGCTGGTGCGCGCGGCCGCGCTgccgggcgcgggggcgggcgcgggcgcgggcgcgggcgcggggggagCGCTGCGCCGCCTGGCCGCCGCGGCGCGCGCCCGACTCGCGCACGCGCTCGCCGCCGACGCCTTcctgccgcccgcgccgcaGACGACGGAGGGCCCGAGCCTGCAGTTCTGGCGGCGCTGcctgggcggcggcgtgcggcTGCTGCGCGCGTCGCTGGCGCTCACGGGCCCGCCCGCGTTGCTGCACGCCGACCCGCTCGTGCTCTCGCTTATagAGACGCTGAGCAcagcggcgggcgcggcggcgggcgcgcagtgcgcgggcgcggcggcggcgctggcggccaCGCTGCCGCGCTCCGGGCCTctccgcgccgccgcgctgcgtCGCCTGGCCGCGCTGGCGCAACTAGCGCTCGCCCGGCTCGACACTGACAACCCGCTGCATCTGAAAGCTTTGGAGCAAGCGCGGTCCGTGATAGCGGAGGCGCGCGCTTTGGAATGA
- Protein Sequence
- MSLFRKPKKIQRRMFCADDEDDGDPEPPPPPIISYDKKENRPVKPTTLLSFADEEEDGEVFKVKKSSQSKRLAKRREKERRRGPDGDNNKYDNNINEDDNGNSAIEDKPKPKKKVTLEGLILSGREALAADGAGDVSDSPEEDDEDSRGFHQYRAESVRAALAVAPGHIPDAALIHAARKTRQQARELGDFVPVTAEVKPGSRLVRDDDGSGDDDEEGRMHVRGLDLPSDKPKRGTAAAPTNEELDSEVEEWEEQQIKKAMPAIVDITGEGLGELNPFAVAPPPPQIPAAPHLRPLGSGKPPATAQELLDALRDRMEELQVDREKTSTQRTEWVARLSRALETRDLRTRRCPQLDAAYRRAQALRGYLTDLIECLDEKLPELEALEARALALHRWRCEYLTERRRADVRDQADDVMYLTARPGAARPPESEEKRRRCAEREGRRRARRRKREAAGAATAHQDGDSSDDELPPAELSHYTREREAIQVGSATLFSDALAAWRSVRGVCARLARFRRRARALYADAYVPDCLPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCLMMYGVRPEKLSSESSGSEEEAEDAPALTEESVREDPDLCLVPMLVNRVVIPKLTELVEHAWDPLCVRACVRLRLLLVRAAALPGAGAGAGAGAGAGGALRRLAAAARARLAHALAADAFLPPAPQTTEGPSLQFWRRCLGGGVRLLRASLALTGPPALLHADPLVLSLIETLSTAAGAAAGAQCAGAAAALAATLPRSGPLRAAALRRLAALAQLALARLDTDNPLHLKALEQARSVIAEARALE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00960945;
- 90% Identity
- -
- 80% Identity
- -