Nnoc017627.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292501.1:2361237-2361581[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 5.1e+03 -2.1 0.1 35 42 3 10 1 11 0.77 2 2 8.4e-10 1.9e-06 28.0 0.0 2 42 16 57 15 60 0.90
Sequence Information
- Coding Sequence
- ATGGTGCGGCATTATAAAAGGAAGACAGATAAAGCTTCTTATTCAAAAGAAAAGCTGCAAGATGCCGTGCGTGCTGACAGAAATGGCGAGTTAAGCGGATACAGGGCAGCCCGTTTATACCAAATACCAAGAATGACTATTATGGATCATGTGAACAAAAAAAGATACAAGTCCGATACTCTTGGAAGAAGCACAGCTCTTTCCAAAGCAACTGAAGACAAACTTGCATCGTATCTCCATACGATGGAACGATACGGATTTGGACTGAGCAGGAAAGAGGTGCTAGAGCTTGTTGGTGACTACGTTACCCAGACGCGCCCATTCCGTCACGAGATCGCATCCTAA
- Protein Sequence
- MVRHYKRKTDKASYSKEKLQDAVRADRNGELSGYRAARLYQIPRMTIMDHVNKKRYKSDTLGRSTALSKATEDKLASYLHTMERYGFGLSRKEVLELVGDYVTQTRPFRHEIAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125400;
- 90% Identity
- -
- 80% Identity
- -