Basic Information

Insect: Nomia melanderi
Gene Symbol: ttk
Assembly: GCA_003710045.1
Location: NW:4133999-4136924[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.35 4.6e+02 -0.3 0.5 30 43 180 194 180 196 0.62

2 6 4.7e-07 0.00061 18.5 0.0 2 38 200 236 199 242 0.85

3 6 2.2e-12 2.8e-09 35.6 0.0 5 39 253 287 251 294 0.86

4 6 0.065 84 2.0 0.0 21 34 321 334 307 342 0.82

5 6 1.2 1.5e+03 -2.0 0.0 32 45 349 363 349 363 0.89

6 6 4.9e-12 6.4e-09 34.4 0.1 4 39 365 400 362 405 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.35	4.6e+02	-0.3	0.5	30	43	180	194	180	196	0.62
2	6	4.7e-07	0.00061	18.5	0.0	2	38	200	236	199	242	0.85
3	6	2.2e-12	2.8e-09	35.6	0.0	5	39	253	287	251	294	0.86
4	6	0.065	84	2.0	0.0	21	34	321	334	307	342	0.82
5	6	1.2	1.5e+03	-2.0	0.0	32	45	349	363	349	363	0.89
6	6	4.9e-12	6.4e-09	34.4	0.1	4	39	365	400	362	405	0.92

Sequence Information

Coding Sequence: ATGTCTGAAGTTGTTGCTCAGCATGAAATTAATCAGAGCTATTGTTTCAAATGGAATGATTATCATAGACATTTATCCAATGTAGTTAGACAACTATTGGAAGAGGATTGCATGGTGGATGTAATACTGGCAGCTGCTGGAGAACGCATTCATGCCCATCGTATAGTCCTTTGTGCATGTAGCACTTTGTTTCGAGAGGTATTGAGCCAAGTAAATGAGGATCATCcaacaataatattaagtgATATATCAGCGCAAGATATAAAATCtattgttgaatttatttatcatggAGAAGTGAGAGTGCCAGTGGAAAATATTAGTAGCTTATTGGATGCTGCAAGGTCTTTAAAAATATGCGGTCTCATTGAGattaatgGTCTAAATGAGATTCACTCAGTTGTAAATACTAAAGAATTTAGTGATAACACTGAAGAACCAATGactattattaatgaaacagaagaaaatgttATGCATGCATTACAATATGGTTATGAAGATTTGGAAGATCAACAAGAACAACAGTTTACTGAAAATTCAACTTTaagcaaaaaaaagaaacgcagACGTGATACCatgaaaagagaatatagTGAAGATATGTTAACATCGGCAATCAATGATTTGAAGTCAGGACAAACATTAATAGAAGCTTCAACTAGGCATAATATACCACGTTCAACATTATACATGCGTGCCAAAGCATTAGGTGTCCAATTAACTGCAACTAGAAATGAATATCCTATAGAATGTATGAAGGCAGCCATAAATGCTGTAATTGTAGGTGGATCAAGTTTGCAACATGCATCGGATATGTTCAGCATACCTAAGACTGTCTTATGGAGAAGAATTCAGAAGGAAGGGTATCAAATACTTCGTTCTGAAATAAAAAGGACCTATGGTACTGATAGACGAGAAGCTGCGGTTAAAGCTTTGGAAAGGGGGGAGAAGTTAACTAAAGTTGCACTTGAATTCAAAATTCCAAAGACTACTTTGTTCAGAGATAAAGCTCGCTTAGTAGACGCAGGGAAATTACCGCTATCATTTTGGAAGAAACGTAAAACGGAAAATGAAGAACTAAAAAGATCTCGTTTGGAGGAAGCTGTTGCTGCGTGTAAAGGAGGAAAAATGTCACAAGCAGCTGCATCGATGACTTACCATATTCCTAAAACAACAATATGGAGACGACTTCAACAGGATGGTAAAAAATCGGAACGTCTATTAAATTCGAGGAAGCAACGTATAACGCCTTCTAAGCAGAGTGCAGTGACAAAGGCCCAAGAGCGATCGGATTTCACATATTGCGAGGTAGCTTCAGAAATTCCCATAACTTATATAGATGAAAATAGTATAGCTGAGGATTCTGTGATAATATTAACAGCGGATGATATGGACGGACTTAATTTAGGGGAAGGACGACAGATTATTGTTAACTCTgAATCAGTTCAAGAATATGTACCGTGTTCTATAggaatcgaagaaaattcaaattactcgCAAACAGAAAGTTAG
Protein Sequence: MSEVVAQHEINQSYCFKWNDYHRHLSNVVRQLLEEDCMVDVILAAAGERIHAHRIVLCACSTLFREVLSQVNEDHPTIILSDISAQDIKSIVEFIYHGEVRVPVENISSLLDAARSLKICGLIEINGLNEIHSVVNTKEFSDNTEEPMTIINETEENVMHALQYGYEDLEDQQEQQFTENSTLSKKKKRRRDTMKREYSEDMLTSAINDLKSGQTLIEASTRHNIPRSTLYMRAKALGVQLTATRNEYPIECMKAAINAVIVGGSSLQHASDMFSIPKTVLWRRIQKEGYQILRSEIKRTYGTDRREAAVKALERGEKLTKVALEFKIPKTTLFRDKARLVDAGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERLLNSRKQRITPSKQSAVTKAQERSDFTYCEVASEIPITYIDENSIAEDSVIILTADDMDGLNLGEGRQIIVNSESVQEYVPCSIGIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_01071101;
80% Identity: iTF_01071101;