Nmel008371.1
Basic Information
- Insect
- Nomia melanderi
- Gene Symbol
- NEGR1
- Assembly
- GCA_003710045.1
- Location
- NW:3894658-4176929[-]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0032 14 4.8 0.0 40 97 58 115 37 136 0.85 2 2 7.5e-08 0.00034 19.7 0.0 29 88 151 210 146 226 0.82
Sequence Information
- Coding Sequence
- ATGATCGGTGAACGTGTGAAGTGTGTTTTAGGGACCATCGGGAACCGCTCGCGGCTCCTCGCGGCGGTTCTCCTGTTATCGATATTTACCGGAAGTGCTTGGACCGACAACTTCACCGGTTCCGAGGGACCGAGCTTTACTGTGCCAATAACGAACGTGACGGTCCCAATGGGCAGAGAAGCGGTGCTCGCTTGCGTTGTCGCGAACCTTTCCCTCCACAAGGTAGCGTGGCTACGAGTGGACACACAGACAATTTTAACGATAGCCAATCACGTGATTACAAAGAATCACAGGATCGGGGTGACACACGCAGAGCAGAAAACGTGGTACCTGCACATACGAGATGTTCGTTTATCGGACCGAGGCGCTTATATGTGTCAGCTTAATACCGATCCGATGAAGAGTCAAACTGGCTATTTGGAAGTTGTAGTTCCGCCTGATATCTCGGATAGTTCTACGAGCACGGACATGGTTGTTAGAGAAGGCAGCAATGTTACACTGCGTTGCGCGGCCACAGGAATACCGGCGCCAAATATCACCTGGAGAAGAGAAGATGGACAAACTATACTTCTTGCGAATGGTGAAGAAGTGAGAAGCGTGGAGGggtcattatttaatatcagcAAAGTAAATCGATTACAAATGGGTGCATATTTTTGCATCGCCTCCAACGGTGTGCCGCCCACTGTCAGTAAAAGAATAATGCTCATAGTACAATTTACCCCGATGATTTCGATACAGAATCAGTTGGTGGGGGCGCAAGAAGGACAACGAATGACTCTGGAGTGTAATTCCGAGGCGTACCCAAAATCGATTAACTATTGGACGAGGGAAAACAACGAGATCATAAAAAATGGTGACAAGTACATACAGTCGGTCTCTGACAACACGTACAAGGTACACATGAATCTTACAATTCTCAGAGTAGCAGTGTCGGATTACGGAACGTACAAATGCATATCAAAAAACTCCCTCGGAGAAACGGATGGTAGCATTAGGCTTTATCaaattccaaCACCAACAACGCAAGTGAGAACGACGACGACTACTCCACAACCTACAATTGAAGAAgTTGAAAACATTCAAAACTCGCGGCAGAGACCATTGCCCAGTGCTGAACCGAGTTCCATTCAAATAACAGTTTCATCGTTACCCAATGTTGTTAGAAGCGATGATATTCGGCTTCATGGCAGAGCGAGTAGCGGCGGTTATAACGACGCGGAAAACAATGTAGCGACAAAAGGACGAAAAAGCATCGACAGCCAAGTGAGACCACGAAGAATCGACAACACGGCGCAATCGATGTCATCCAGGGGTAGTAGCTCGAATTTTCTCGCGCAATCTAGAGCGGCCATCTGCATAATCCTACTATCTGCGTTGTCGTAG
- Protein Sequence
- MIGERVKCVLGTIGNRSRLLAAVLLLSIFTGSAWTDNFTGSEGPSFTVPITNVTVPMGREAVLACVVANLSLHKVAWLRVDTQTILTIANHVITKNHRIGVTHAEQKTWYLHIRDVRLSDRGAYMCQLNTDPMKSQTGYLEVVVPPDISDSSTSTDMVVREGSNVTLRCAATGIPAPNITWRREDGQTILLANGEEVRSVEGSLFNISKVNRLQMGAYFCIASNGVPPTVSKRIMLIVQFTPMISIQNQLVGAQEGQRMTLECNSEAYPKSINYWTRENNEIIKNGDKYIQSVSDNTYKVHMNLTILRVAVSDYGTYKCISKNSLGETDGSIRLYQIPTPTTQVRTTTTTPQPTIEEVENIQNSRQRPLPSAEPSSIQITVSSLPNVVRSDDIRLHGRASSGGYNDAENNVATKGRKSIDSQVRPRRIDNTAQSMSSRGSSSNFLAQSRAAICIILLSALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -