Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637853.1:9815434-9818636[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.01 1 10.4 0.2 3 23 483 505 482 505 0.94

2 10 0.0075 0.77 10.8 0.9 1 23 511 535 511 535 0.98

3 10 0.00023 0.023 15.6 0.2 1 23 541 565 541 565 0.97

4 10 0.0014 0.14 13.1 0.3 3 23 573 595 572 595 0.91

5 10 0.0046 0.48 11.5 3.9 1 21 602 624 602 626 0.95

6 10 8.3e-05 0.0086 17.0 0.4 2 23 634 657 633 657 0.95

7 10 3.3e-05 0.0034 18.2 1.8 1 23 663 687 663 687 0.93

8 10 5e-05 0.0051 17.7 0.6 1 23 693 717 693 717 0.95

9 10 8.1e-05 0.0083 17.0 1.2 1 23 723 745 723 745 0.99

10 10 5.2e-05 0.0053 17.6 1.1 1 23 834 859 834 859 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.01	1	10.4	0.2	3	23	483	505	482	505	0.94
2	10	0.0075	0.77	10.8	0.9	1	23	511	535	511	535	0.98
3	10	0.00023	0.023	15.6	0.2	1	23	541	565	541	565	0.97
4	10	0.0014	0.14	13.1	0.3	3	23	573	595	572	595	0.91
5	10	0.0046	0.48	11.5	3.9	1	21	602	624	602	626	0.95
6	10	8.3e-05	0.0086	17.0	0.4	2	23	634	657	633	657	0.95
7	10	3.3e-05	0.0034	18.2	1.8	1	23	663	687	663	687	0.93
8	10	5e-05	0.0051	17.7	0.6	1	23	693	717	693	717	0.95
9	10	8.1e-05	0.0083	17.0	1.2	1	23	723	745	723	745	0.99
10	10	5.2e-05	0.0053	17.6	1.1	1	23	834	859	834	859	0.96

Sequence Information

Coding Sequence: ATGTCTCGTAAAGGAACTCCCTCCGCTTGCAAGTCAAAACAAATCCCGCGAATCTTTCGTAATCGGCGTGGTTTGTGTTCGGTTCGCGGCTGGGCGCACGGCGAGGTCGGCGTTGTGGGTGGAACGGTAGGCTACAATCAGTCGAGTCTGTTGTCCGCTTCTCTGGACGAGGACAAAAGGGTGGtagcaaataaaaaagaagaacagaaGGCGAGAAGGATCGACGAAACTGTACAGTATCACGATAGAGGAGCGTGGATCGAGGGTAGCCAAGCGGCGAACGGCGGTACCGAGGGGTCGAGTGCCTTGGTACACGGGATTAATAAAATCGTCGATGTCGAGGCTGTAGCCGACATCGAGAAATGGTTAAAAACGCGCACGGAATCCGTGTCGAACATGGACCTCGACGCGATCAAGTCCGGGGTCGAGGAGGGCGTCGACCGATACCTGGGCGAGGAACTCCAGCACGCTTTTCTGGAAAAGGACCCTGACGGGCTGTCAATTGACATCGATCTGTCTGACAAGAAACTCAATTTAGGTTATGATCCTTTATTACAAGAGCTTCAGAATGAGAAGCTGCTAGACGAGAAAGATAGCTTTATATTGCCGGAGTTTCAGTTGGATCATTTGGATCCGCTCGCGTTATCTCCGGACGACATGATGGTCGCCGGTGAAATTCTACCGTCGACCAGTGCTCAACCTACGTTAAGTGTCCCTAATAAGGACGTCGATGATATATGTGCAGAGACTGATGAAAGTTCGTTGATAAAGAAATCAATGATAGAGGATAGTCAAGAGCCGCGTAACAAGTCTACCCAAGTCGTTGTCGACGACTTGCACGGTATAGCGAATGCGAATAAGGAAATTCAATTACAAAGGGAGGACGATAGCCTGCCCGATAATACGACGAATCTCTATGCGCAAGATCTTAGCTCAGAAAGTACGGTGCAGGAACTAGTCGGCGCGAAGTTGATCGAAAGCGATACAGAGAATGCTATAATCGAACAATTGAAAACGAGAGCCAAGGTAAGGTTGGAGCCACGTATTATTAAGAAGCGTAAAAAGATACCGGAAATGATAGAGAAGAAGCTGgataatgaaattataatttctgGCGAGAATATTGTAGATACTGAAGACGGTGTAATGGCTGTTGTAGCCATATCTACAGATAAGATTTCGAACATGACACAGATTGTTATAAACACCGGCACAGAGGAGCAAATTTATCAGGGAAAGACCTCGGAGCTCATAGAAGCTACCGGAAATTTTCCAAAATTACCGAAGATAGAAACGTCCACCGTATGGAATGGAACAGCGGATCATAGTATAGAAAATTCGAGTAACCAGCACGAAATGGTAATAACTAATGCTTTGGAGGAATTAGGGATAACAGACGATAACTTGCAACCGGTGTCCGTTAATGAACACGGAAAGATATGGCTATGCCCTCGTGACGATTGTAATAGGCAATTTAGTAAACTCTACGCTCTGAAAGGCCATTTATTAGCACACTACGGTGTCAGACCTTTTAAGtGCGACTTTGAGGGTTGCGCCTGGGCATTTTATTCAGAGTTCAAGCTTAAACGGCACAAAGAAACTCATTTGAAACGGAAAGACTATGTCTGCGAGGTAGAAGGTTGTAATCGTCGATTTACAacgatttataatttatgGAGTCACGCGAAGCTGCATAGTCGGCCGAATCGGATACTATGTCAAGTGCCAGACTGCCAAGAGAAGTTTCAGACAAAGAGAGCCCTGGAACTGCATATGAAATCTCATGATCAGAGCCATGCTCCGTATGTTTGCAAACACGAAGGTTGCGGGAAGAGATATTATAGTAGTAACGCTTTGACGTCGCATCAAAGATGCCATAGTTATAAAGAAGTAGACGTAAAATGCTCGTGGCCAGGTTGTGGCAAAGTGTTCGATAAGCCTTGCAGGCTGAAAGCGCACATACGCTCGCATACTGGTTGCAAGCCTTATCTTTGTACATTTCAAGGCTGCCAATGGGCGTTCTCTTCTTCAAGCAAATTGAAGAGACACCAAAAGAAGCACACCAACGAACGAAAGTTTGTGTGCGATGTTCCTTCCTGTGGTAAGGCATTTATGAGATCGGAGCATCTGAAGGAACACAGGCTAACCCATAAGGAAGGGAGATACTTTCAGTGCTTCATATGTAACGCGAAGTTTTCGGCGAAAAGTAGCTTGTACGTTCATATAAAGAAGCACCAAGTGAAAGAGGAAATAGAACCAAATTCAAACGACACTCTGAATAATCAGAAACGGACTAAAGTAAAGGAAACTCAATGCTCCAGGGTGAACCCTGTTGTGAAATCGAAAAGAAAGTCAATAGATCTGAACGTGAATGCGGCTTGTCTGAGTTCGTCTACAGTAACAGAGAAATCGGAATACAATGATGCAAACAtccgtaataataatgaagatCAAATTAAAGACGACACGGTACCTCTGCAAGATCAATTCAAGACTGTATACCATTGTCCAGTTGAAACCTGTACGAGGTCCTATACCACGAAGGCTACATTAAGAGCACACATGTTAAAAATACACGGCACTCCCGTTGACGAGTGCGATAAAACGTCTGAAAGAATACCGGAAAATTCTGTTTGTAACATGGACTACATTTTGTATACTACTCCCTCGGTCTCAGAACCCACAGAACAAATGATAATGGTAGCACCTTGCGACGCGGTTATTCTCAGTACTACTGCTTCAGGAACAGATCGTTCCCTCCCTGAGCCAGAACCACCGCCccttaataatatattgaaaacaTCGGAACCTTCCCCAAACGTTATGACCCATAGACAATTGCCCGATCCACACGCGAGGAAAGATCAGGGTTCAGCAAGAACTGATTTAACGTTTTCGGATGTGTGGAAATTAAAAGCGAACGGTGCTGTGTTAGATTCGGTTGTCGGCTCCTCCGACGTTGTATTAGGTGCCAGTGATTTAGAAGAAGGCTTGTTGCTCACAGAGGAATTGCCTTCGATGTATTATCAAGACGATGTTGTAGGAACGGAGTATCAGGTACTGTTACTTGACTCAGTACCATCTGAAAGTACTATAAACCTTCGAGGGCTCGAATAA
Protein Sequence: MSRKGTPSACKSKQIPRIFRNRRGLCSVRGWAHGEVGVVGGTVGYNQSSLLSASLDEDKRVVANKKEEQKARRIDETVQYHDRGAWIEGSQAANGGTEGSSALVHGINKIVDVEAVADIEKWLKTRTESVSNMDLDAIKSGVEEGVDRYLGEELQHAFLEKDPDGLSIDIDLSDKKLNLGYDPLLQELQNEKLLDEKDSFILPEFQLDHLDPLALSPDDMMVAGEILPSTSAQPTLSVPNKDVDDICAETDESSLIKKSMIEDSQEPRNKSTQVVVDDLHGIANANKEIQLQREDDSLPDNTTNLYAQDLSSESTVQELVGAKLIESDTENAIIEQLKTRAKVRLEPRIIKKRKKIPEMIEKKLDNEIIISGENIVDTEDGVMAVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPKIETSTVWNGTADHSIENSSNQHEMVITNALEELGITDDNLQPVSVNEHGKIWLCPRDDCNRQFSKLYALKGHLLAHYGVRPFKCDFEGCAWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTIYNLWSHAKLHSRPNRILCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSHQRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFVCDVPSCGKAFMRSEHLKEHRLTHKEGRYFQCFICNAKFSAKSSLYVHIKKHQVKEEIEPNSNDTLNNQKRTKVKETQCSRVNPVVKSKRKSIDLNVNAACLSSSTVTEKSEYNDANIRNNNEDQIKDDTVPLQDQFKTVYHCPVETCTRSYTTKATLRAHMLKIHGTPVDECDKTSERIPENSVCNMDYILYTTPSVSEPTEQMIMVAPCDAVILSTTASGTDRSLPEPEPPPLNNILKTSEPSPNVMTHRQLPDPHARKDQGSARTDLTFSDVWKLKANGAVLDSVVGSSDVVLGASDLEEGLLLTEELPSMYYQDDVVGTEYQVLLLDSVPSESTINLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761152;
90% Identity: iTF_01069160;
80% Identity: -