Basic Information

Insect: Nomada ruficornis
Gene Symbol: Prdm14
Assembly: GCA_951802695.1
Location: OX637851.1:9065800-9068833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.1 2.1e+02 3.1 7.4 1 23 33 56 33 56 0.92

2 20 3.9e-06 0.0004 21.1 0.3 1 23 62 84 62 84 0.97

3 20 1.7e-05 0.0017 19.1 1.4 1 23 90 112 90 112 0.97

4 20 0.00093 0.096 13.7 1.4 1 23 118 140 118 140 0.98

5 20 5.2e-07 5.3e-05 23.9 4.5 1 23 146 169 146 169 0.98

6 20 0.00099 0.1 13.6 1.7 3 23 187 208 185 208 0.94

7 20 0.012 1.2 10.2 0.6 3 23 218 238 216 238 0.95

8 20 5.5e-06 0.00057 20.7 0.5 2 23 245 266 245 266 0.98

9 20 4.8e-06 0.00049 20.9 0.6 3 23 274 294 273 294 0.99

10 20 2.7e-06 0.00027 21.7 0.9 1 23 300 322 300 322 0.99

11 20 0.12 13 7.0 0.7 2 23 363 385 362 385 0.96

12 20 4.2e-06 0.00043 21.0 1.4 1 23 391 414 391 414 0.98

13 20 1.3 1.3e+02 3.8 0.6 2 23 420 441 419 442 0.93

14 20 3.1e-05 0.0032 18.3 0.3 1 23 447 469 447 469 0.98

15 20 0.0097 1 10.4 0.5 2 23 476 498 475 498 0.94

16 20 4.1e-05 0.0042 17.9 2.1 1 23 519 542 519 542 0.93

17 20 0.0024 0.25 12.3 0.1 1 23 553 575 553 575 0.95

18 20 0.0094 0.97 10.5 3.6 1 23 581 603 581 603 0.94

19 20 5.8e-07 6e-05 23.7 1.1 1 23 609 631 609 631 0.98

20 20 2e-05 0.0021 18.9 0.1 1 21 637 657 637 658 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.1	2.1e+02	3.1	7.4	1	23	33	56	33	56	0.92
2	20	3.9e-06	0.0004	21.1	0.3	1	23	62	84	62	84	0.97
3	20	1.7e-05	0.0017	19.1	1.4	1	23	90	112	90	112	0.97
4	20	0.00093	0.096	13.7	1.4	1	23	118	140	118	140	0.98
5	20	5.2e-07	5.3e-05	23.9	4.5	1	23	146	169	146	169	0.98
6	20	0.00099	0.1	13.6	1.7	3	23	187	208	185	208	0.94
7	20	0.012	1.2	10.2	0.6	3	23	218	238	216	238	0.95
8	20	5.5e-06	0.00057	20.7	0.5	2	23	245	266	245	266	0.98
9	20	4.8e-06	0.00049	20.9	0.6	3	23	274	294	273	294	0.99
10	20	2.7e-06	0.00027	21.7	0.9	1	23	300	322	300	322	0.99
11	20	0.12	13	7.0	0.7	2	23	363	385	362	385	0.96
12	20	4.2e-06	0.00043	21.0	1.4	1	23	391	414	391	414	0.98
13	20	1.3	1.3e+02	3.8	0.6	2	23	420	441	419	442	0.93
14	20	3.1e-05	0.0032	18.3	0.3	1	23	447	469	447	469	0.98
15	20	0.0097	1	10.4	0.5	2	23	476	498	475	498	0.94
16	20	4.1e-05	0.0042	17.9	2.1	1	23	519	542	519	542	0.93
17	20	0.0024	0.25	12.3	0.1	1	23	553	575	553	575	0.95
18	20	0.0094	0.97	10.5	3.6	1	23	581	603	581	603	0.94
19	20	5.8e-07	6e-05	23.7	1.1	1	23	609	631	609	631	0.98
20	20	2e-05	0.0021	18.9	0.1	1	21	637	657	637	658	0.96

Sequence Information

Coding Sequence: ATGTGTCTAAAATACGAAACAATATTCCATTGTTCATCTTCACGCAATATATCATCAAGCATCGGTAGGTCACGAAGGGTGATCTCACGAGCCGTTCACGAGTGCATTAAATGCGGGGCCTGTTTCTGCCACACGAGGAAGCTCGTGGAACACCTGAAGAACCTCCACGGAATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACGTTCAGAAGCCCCATGAACATAGCCCGTCACAAATTGATTCACACCGGTTCGAAGAAGTTCGCCTGCGACCTGTGCGACTACAGATCGAACCAAAAATCCAATCTGGAGAACCATCGTCGACGGCACACGAAAGATTACTCGTTCAAATGCGAGCATTGCCAGAAAGGTTTCGTCCTGAGGACGGAGTACCTCGAGCACGTGAACGTCCACACGAGGAAACAGGTGTATCGATGCGACCATTGCGACAAGTCTTACCCGTACAAAAAGAATTTAACCAATCATCTAAGAACGCGGCACGCGAATATTCTGCCCGTGGAATTGAAGAACGACGCGCCGACGAGGCACTTGTGCACGATTTGCCTGGAAACCTTCGCGAGGAAATTGTCCCTGGGGAGGCACATGAGACAGACACACGGGGTTCGGGAGAAAACGAAACACCTGTGCGATTTGTGTGGCGCAGTGCTGTCTTCTAAGAGGAGGCTGATGGTGCACAGACGGGGCCACGTTAACGAAAAGATTGCGAAATGCGATTTGTGCGACAAAGAATTCTCGAGCAAGGAAAACCTTGGCATTCATCGGCGCGTGCACACCGGAGAGAAACCGCACGGTTGTCCGCAGTGTGGCAGACGATTCACGCAGAGAACGTCTTTGATCTTGCACCTGAGGTATCATTCTGGGGAGAGGCCCTATCAGTGCGTCGATTGCGGCAAGGGATTCGTCTCTGGAAGCTTCCTGAGGAAACACCGCAAGACACACGAGAAGACCACGCGCGACTGGGACAACGATCACGACGAGCTTACCAGCTGCGAAGTTTTCAGAATCAAGAGCGAGGAGATTCTTCTCGATCCTGGACAGAGATTCGAAGGGAACGAGAAGGTCTGCGACCTTTGTCAAGAAAAGTTTCACTTCGTGACGAGATTGGTGGCGCACCTGAGGATCGTCCACGGTATCCACAGGCCCTTCAAATGCACCACCTGTGGAAAAACATATCCGCAGCAATTCATGCTGAATGCTCACGTGAAAAAGTCCCACACGCCTAAGACAAGTCCGTGTGGTCAGTGCAGCTTCATGGGGGTAAACGCCACGGACGTGGAAAGGCACTCGAAACGCCACCATCGGGAGGTGAAGTTCACCTGCGAAATCTGCAGCGAGAACTTCGTGGACAAGGACTCCCTCATAACCCACACAACCATGCACGATTTTATGCAATATCAACAGTGCAACGCTTGTGGTAGCACTTTCAACGATGTTTACAGTTTAAAGGAGCATAATCGCCTGTACCACTACGACCCGGCAGCATCAACGGAAGAAAAGCTCGAGGAAGCCGACCCGCAGAATATCGAGCACAAATGCGACATTTGCGGGAAAGTTTACAAGTACAAGTCGGTGCTGAAGCAGCACAAAGTAAAGGCACACGGTGACACGCCGATTTACGAGAGGCGTCGATATTTGTGCGCTCTTTGCGGCAAGGAGCTTAAAACGGCGAAAGGTCTCGAGATCCATAATCGTTCGCACACCGGCGAAAAGCCGTACACCTGCGAGGTGTGCGGCAAATGTTTCGCCTGCGAAACTTTGCTCAGGACTCACAATGTCACCCACACCGGTGAAAGAAAGTACTCGTGTGATCAGTGTGGAAAAGCCTTTACACAGAGGTCCACGCTGGTGGTGCACAAACGTTACCACACAGGTGAACGCCCGTACGTTTGTCCCAGGTGTGGAAAAGGTTTCGTCACTAGAACTGTTTTGAACACTCACATGAAGTCCTGCCGCTGA
Protein Sequence: MCLKYETIFHCSSSRNISSSIGRSRRVISRAVHECIKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKKFACDLCDYRSNQKSNLENHRRRHTKDYSFKCEHCQKGFVLRTEYLEHVNVHTRKQVYRCDHCDKSYPYKKNLTNHLRTRHANILPVELKNDAPTRHLCTICLETFARKLSLGRHMRQTHGVREKTKHLCDLCGAVLSSKRRLMVHRRGHVNEKIAKCDLCDKEFSSKENLGIHRRVHTGEKPHGCPQCGRRFTQRTSLILHLRYHSGERPYQCVDCGKGFVSGSFLRKHRKTHEKTTRDWDNDHDELTSCEVFRIKSEEILLDPGQRFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCTTCGKTYPQQFMLNAHVKKSHTPKTSPCGQCSFMGVNATDVERHSKRHHREVKFTCEICSENFVDKDSLITHTTMHDFMQYQQCNACGSTFNDVYSLKEHNRLYHYDPAASTEEKLEEADPQNIEHKCDICGKVYKYKSVLKQHKVKAHGDTPIYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_01066403; iTF_01068431;
80% Identity: -