Basic Information

Insect: Nomada ferruginata
Gene Symbol: Prdm14
Assembly: GCA_963583965.1
Location: OY757217.1:8217256-8220408[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.8 2e+02 3.2 7.4 1 23 19 42 19 42 0.92

2 20 3.5e-06 0.00039 21.2 0.3 1 23 48 70 48 70 0.97

3 20 2.1e-05 0.0024 18.7 1.4 1 23 76 98 76 98 0.97

4 20 0.00084 0.092 13.7 1.4 1 23 104 126 104 126 0.98

5 20 4.7e-07 5.1e-05 23.9 4.5 1 23 132 155 132 155 0.98

6 20 0.0021 0.23 12.5 1.1 3 23 173 194 171 194 0.94

7 20 0.011 1.2 10.2 0.6 3 23 204 224 202 224 0.95

8 20 5e-06 0.00055 20.7 0.5 2 23 231 252 231 252 0.98

9 20 4.3e-06 0.00048 20.9 0.6 3 23 260 280 259 280 0.99

10 20 2.4e-06 0.00026 21.7 0.9 1 23 286 308 286 308 0.99

11 20 0.11 12 7.0 0.7 2 23 349 371 348 371 0.96

12 20 3.8e-06 0.00042 21.1 1.4 1 23 377 400 377 400 0.98

13 20 1.1 1.2e+02 3.8 0.6 2 23 406 427 405 428 0.93

14 20 2.1e-05 0.0023 18.7 0.3 1 23 433 455 433 455 0.98

15 20 0.0088 0.97 10.5 0.5 2 23 462 484 461 484 0.94

16 20 3.7e-05 0.0041 17.9 2.1 1 23 505 528 505 528 0.93

17 20 0.0022 0.24 12.4 0.1 1 23 539 561 539 561 0.95

18 20 0.0085 0.94 10.5 3.6 1 23 567 589 567 589 0.94

19 20 5.2e-07 5.8e-05 23.8 1.1 1 23 595 617 595 617 0.98

20 20 1.8e-05 0.002 18.9 0.1 1 21 623 643 623 644 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.8	2e+02	3.2	7.4	1	23	19	42	19	42	0.92
2	20	3.5e-06	0.00039	21.2	0.3	1	23	48	70	48	70	0.97
3	20	2.1e-05	0.0024	18.7	1.4	1	23	76	98	76	98	0.97
4	20	0.00084	0.092	13.7	1.4	1	23	104	126	104	126	0.98
5	20	4.7e-07	5.1e-05	23.9	4.5	1	23	132	155	132	155	0.98
6	20	0.0021	0.23	12.5	1.1	3	23	173	194	171	194	0.94
7	20	0.011	1.2	10.2	0.6	3	23	204	224	202	224	0.95
8	20	5e-06	0.00055	20.7	0.5	2	23	231	252	231	252	0.98
9	20	4.3e-06	0.00048	20.9	0.6	3	23	260	280	259	280	0.99
10	20	2.4e-06	0.00026	21.7	0.9	1	23	286	308	286	308	0.99
11	20	0.11	12	7.0	0.7	2	23	349	371	348	371	0.96
12	20	3.8e-06	0.00042	21.1	1.4	1	23	377	400	377	400	0.98
13	20	1.1	1.2e+02	3.8	0.6	2	23	406	427	405	428	0.93
14	20	2.1e-05	0.0023	18.7	0.3	1	23	433	455	433	455	0.98
15	20	0.0088	0.97	10.5	0.5	2	23	462	484	461	484	0.94
16	20	3.7e-05	0.0041	17.9	2.1	1	23	505	528	505	528	0.93
17	20	0.0022	0.24	12.4	0.1	1	23	539	561	539	561	0.95
18	20	0.0085	0.94	10.5	3.6	1	23	567	589	567	589	0.94
19	20	5.2e-07	5.8e-05	23.8	1.1	1	23	595	617	595	617	0.98
20	20	1.8e-05	0.002	18.9	0.1	1	21	623	643	623	644	0.96

Sequence Information

Coding Sequence: ATGACTGACAAAAATTATATACCAGTGTCACGAAGGGTGATCTCACGAGCCGTTCACGAGTGCATTAAATGCGGGGCCTGTTTCTGCCACACGAGGAAGCTCGTGGAGCACCTGAAGAACCTCCACGGAATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACGTTCAGAAGCCCCATGAACATAGCCCGTCACAAATTGATTCACACCGGTTCGAAGAAGTTCGCCTGCGACCTGTGCGACTACAGATCGAACCAAAAATCCAATCTGGAGAGCCATCGTCGACGGCACACGAAAGATTACTCGTTCAAATGCGAGCATTGCCAGAAAGGTTTCGTCCTGAGGACGGAGTACCTCGAGCACGTGAACGTTCACACGAGGAAACAGGTGTATCGATGCGACCATTGCGACAAGTCTTACCCGTACAAAAAGAATTTAACCAATCATCTAAGAACGCGGCACGCGAATATTCTGCCCGTGGAATTGAAGAACGACGCGCCGACGAGGCACTTGTGCGCGATTTGCCTGGAAACCTTCGCGAGGAAATTGTCCCTGGGGAGGCACATGAGACAGACACACGGGGTTCGGGAGAAAACGAAACACCTGTGCGATTTGTGTGGCGCAGTGCTGTCTTCTAAGAGGAGGCTGATGGTGCACAGACGGGGCCACGTTAACGAAAAGATTGCGAAATGCGATTTGTGCGACAAAGAATTCTCGAGCAAGGAAAACCTAGGCATTCATCGGCGCGTGCACACCGGAGAGAAACCGCACGGTTGTCCGCAGTGTGGCAGACGATTCACGCAGAGAACTTCTTTGATCTTGCACCTGAGGTATCATTCTGGGGAGAGGCCCTATCAGTGCGTCGATTGCGGCAAGGGATTCGTCTCTGGAAGCTTCCTGAGGAAACACCGCAAGACACACAAGAAGACCACGCGCGACTGGGACAACGATCACGACGAGCTTACCAGCTGCGAAGTTTTCAGAATCAAGAGCGAGGAGATTCTGCTCGATCCTGGACAGAGATTCGAAGGGAACGAGAAGGTCTGCGACCTTTGTCAAGAAAAGTTTCACTTCGTGACGAGATTGGTGGCGCACCTGAGGATCGTCCACGGTATCCACAGGCCCTTCAAATGCACCACCTGTGGAAAAACATATCCGCAGCAATTCATGCTGAATGCTCACGTGAAAAAGTCCCACACGCCTAAGACAAGTCCGTGTGGTCAGTGCAGTTTCATGGGGGTAAACGCCACGGACGTGGAAAGGCACTCGAAACGCCACCATCGGGAGGTGAAGTTCACCTGCGAAATCTGCAGCGAGAACTTCGTGGACAAGGACTCCCTCATAACCCACACAAGCATGCACGATTTTATGCAATATCAACAGTGCAACGCTTGTGGTAGCACTTTCAACGATGTTTACAGTTTAAAGGAGCATAATCGCCTGTACCACTACGACCCGGCAGCATCAACGGAAGAAAAGCTCGAGGAAGCCGACCCGCAGAATATCGAGCACAAATGCGACATTTGCGGGAAAGTTTACAAGTACAAGTCGGTGCTGAAGCAGCACAAAGTAAAGGCACACGGTGACACGCCGAATTACGAGAGGCGTCGATATTTGTGCGCTCTTTGCGGCAAGGAGCTGAAAACGGCGAAAGGTCTCGAGATCCATAATCGTTCGCACACCGGCGAAAAGCCGTACACCTGCGAGGTGTGCGGCAAATGTTTCGCCTGCGAAACTTTGCTAAGGACTCACAATGTCACCCACACCGGTGAAAGAAAGTACTCGTGTGATCAATGTGGAAAAGCCTTTACACAGAGGTCCACGCTGGTGGTGCACAAACGTTACCACACAGGTGAACGCCCGTACGTTTGTCCCAGGTGTGGAAAAGGTTTCGTCACTAGAACTGTTTTGAACACTCACATGAAGTCCTGCCGCTGA
Protein Sequence: MTDKNYIPVSRRVISRAVHECIKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKKFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEHCQKGFVLRTEYLEHVNVHTRKQVYRCDHCDKSYPYKKNLTNHLRTRHANILPVELKNDAPTRHLCAICLETFARKLSLGRHMRQTHGVREKTKHLCDLCGAVLSSKRRLMVHRRGHVNEKIAKCDLCDKEFSSKENLGIHRRVHTGEKPHGCPQCGRRFTQRTSLILHLRYHSGERPYQCVDCGKGFVSGSFLRKHRKTHKKTTRDWDNDHDELTSCEVFRIKSEEILLDPGQRFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCTTCGKTYPQQFMLNAHVKKSHTPKTSPCGQCSFMGVNATDVERHSKRHHREVKFTCEICSENFVDKDSLITHTSMHDFMQYQQCNACGSTFNDVYSLKEHNRLYHYDPAASTEEKLEEADPQNIEHKCDICGKVYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_01070509;
80% Identity: -