Nruf009789.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada ruficornis
Gene Symbol
-
Assembly
GCA_951802695.1
Location
OX637851.1:9085553-9093028[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.13 14 6.9 6.6 1 23 77 99 77 99 0.97
2 25 1.3e-06 0.00014 22.6 3.7 1 23 105 127 105 127 0.98
3 25 0.077 7.9 7.6 1.9 1 23 134 157 134 157 0.94
4 25 7.7e-07 8e-05 23.3 1.7 1 23 163 185 163 185 0.98
5 25 1.2 1.3e+02 3.8 3.9 2 20 191 209 190 213 0.82
6 25 0.001 0.11 13.5 5.9 1 23 220 242 220 242 0.97
7 25 3.2e-07 3.3e-05 24.5 0.9 1 23 246 268 246 268 0.99
8 25 0.043 4.4 8.4 1.1 1 23 274 296 274 296 0.94
9 25 6.6e-06 0.00068 20.4 0.6 1 23 302 324 302 324 0.99
10 25 0.00019 0.02 15.8 1.6 1 23 467 489 467 489 0.93
11 25 0.00024 0.025 15.5 2.9 1 23 495 517 495 517 0.97
12 25 0.00041 0.042 14.8 4.5 1 23 524 547 524 547 0.97
13 25 1.1e-05 0.0011 19.8 3.8 1 23 553 575 553 575 0.98
14 25 0.017 1.7 9.7 1.5 2 20 581 599 580 601 0.91
15 25 1.7e-05 0.0017 19.1 5.5 1 23 651 673 651 673 0.99
16 25 0.096 9.9 7.3 0.4 1 14 677 690 677 691 0.89
17 25 0.00017 0.018 16.0 1.0 1 23 812 835 812 835 0.96
18 25 4.1e-06 0.00042 21.1 4.1 1 23 841 863 841 863 0.98
19 25 0.0016 0.17 12.9 5.6 1 23 872 895 872 895 0.96
20 25 0.0041 0.42 11.6 1.2 1 23 901 923 901 923 0.91
21 25 0.00015 0.016 16.1 2.0 1 23 928 951 928 951 0.96
22 25 0.0051 0.53 11.3 0.5 1 23 957 979 957 979 0.96
23 25 1.4e-07 1.4e-05 25.7 0.7 1 23 983 1005 983 1005 0.99
24 25 0.0014 0.14 13.1 6.3 1 23 1011 1033 1011 1033 0.99
25 25 7.9e-05 0.0081 17.0 3.2 1 23 1039 1061 1039 1061 0.97

Sequence Information

Coding Sequence
ATGTTCATGATGAAGGAGCCACCGCCTAACGAAGAATCGAGCTCCCAAGCACCGAAAGACAGCACCGTTCAGCCGGCAAAGGCAAGCCAGACCGAAGAGAAGTCGAAGGGAAAGGCGTCCGTTAACGATCAATTCGATGATCTCGACGATACACCGTTAGACTTCCGGAAGAAGCAGGAACAAGGGAGGAGCAAGTCCCCGGCCAAGCAGGCCTCGAAGAAAAAGCTGCACACCTGCGAGATCTGTTACGCGACGTTCGATCGCAAGAGCAAGCACACGAGGCACATGTACAAGCACAGCAACTCGAGGCCCCACAAGTGTTCAATTTGCTCCAAGGGGTTCAAAACGAGTGCCCACTTGAACAGGCACATGGAGGTGCACGACGAGCCGGTGAATCTACACGCGTGCAACCTCTGCGATTTCAAGGCTCGCACCAAGCCCTACCTGAAGATCCACTACATTAGAAAGCACACGGTGGACTACAACTACAAATGTGAACAGTGCGGCAAGATGTTCAAGGTGCAGTCCGATTACACGACCCACATGAAGGATCACGACACGGAGTCCTGCGTGTGCGATATCTGCGGGTCATCTTATCCAAGCAAGAGCTCGTTGTACTTCCATAAGCATTACAAGCACAAGACCAAGGTGAAACAGTTTCAGTGTCAGACTTGCAAAAAGAAGTTCAAGACGCAGAAGAATCTGGAGTGTCACATGGAGTTGCATAAGATTAAGTACGTATGCGAGCAGTGCGGCATGGAGTTCAAGAGTAAATACGGCCTAACCAAGCACCTGAGGACGCATTCCGGGGAAAAGTCCTATCTGTGTGCGATTTGCGGGAAAACCTTCGGATGTCTCAGCTCGCAGAAGATCCACCTGTTAACCCACGTGGGCGAGCGACCGTACGTTTGCGATATTTGCGGTCAGAGCTTCACGCAGAGGTCTCCGATGATGCTGCACCGCAGGAAACACCCAGGTGTCCATCCACCGCCACCTCCGATTAAGATCACGAACCTGCTGCACGGTGTGCAGGATAAAATAATTGTGAACAAGAGCGGCAAgCCTCGAGCTCGTGATCCTCTAGAACAAACGTACCTCGTCGTGCAAAACGTCGACAAGTACTTTCTCCTGCCTGTCGATCACGATATTATAGTGAAAAAGGAATCAGAAGAAGATCCCATCGTACCTGACATAGAAATCAAGACCGAAATTCGAGACGACATTCCCGGGAAGTttgcaatgaaatttttccCAGAATTTCCCAACAGGACAGACGAGAAGCCTTGTTTGATTCCGAAGCTGTCTTTTCAACTACCCCTACAGTTGCCTCGGAACGTCTTGGATGCCCCCTTGGCGAACTTCCTAAGAGCACCGACGACAGACAGCGACGACAAGATGTTCTTTTGCGACAACTGTTCCAAGGGATTCAGGAGTAAGAGATCTTTGCGCATACACATGCCGACCCATAGCGATGCCCGTAACTTCGAGTGCACGGTGTGCCATCAGATGCTGAAGACCAGACGAACACTTCGGCGCCACATGATTCTGCACACCGACAGCAGTAAGGTGTTCAAGTGCTCCGACTGCAGTTTCGTGTCGAAAAGGAAGCACAGCTTGAAGCGTCATCAGGCCAGGATGCACACCGAGAACTCCGAGTACAACTGTCCCCACTGTCCGAAGATGTTCAAACTCAGCATGGACTTTAACAGGCATCAACGAAAACACGCGGTCGCGCCGTGTCGCTGCGAGGTGTGCGGCAAGATGTATCAGAACGAGCACTATCTCCTGATGCATCGAGCCAAGGGGAAGAATTGCACGACCACTTACTGCATGCGTTACGAGGATGTGAAAGATGAACAGGACTCGTCCGGGAGCTCCTCCAGCCCGGACACTGAGAAGATCACGGTGAAAGCAACGAccaggaagaggaagagagaggtGACGAGGGTGTTCAAGTGTAGCAAGTGCAAATGGCGATTCACCACTTGGAGATTGCTTCACAAACATATAAAACGCCACTTCGTTAGCTACAAGTGCGAGACTTGCGGAGCTGTGTTCAAGAAATCAGCGCAGCATTTAACCCCGAAGAACAGAGCCACTGCCGTCACTCAAGCAAAAGGCAAATCAAAATCGCCGAACGGACCATCGAGTATCCTTCGAAGAAGAATCTCTCGCCGAACCTCGAAAATCCACAAACGAAGAAGTAACAGACATTCGAAAAATTCTACTCGTACCACCGAACGAACAAATATTTCTCCCCGCATTGCAGACTTCGAACCGATGGAAAGAAACGACAAAGTCAGCACTTGCTCGAAGAATTCGCCGAACAAAAAATTGCTACCGCGTTCCAACGTTTGCCCCCACCAAGTACTGAACGATAGAAAAGATTCCGCGCCGCAAGAAGATCTGTACAAGATGCTACGCGACGGGACGTACACTTGCGACATTTGCGAAACAACGTTCGAGCAGAAGAGCAAAATTCTCCGTCACATCACCAGCAAGCACAGTTTCCATCGGCCCTTCAAATGCTCCATCTGCGACAAAACGTTTAAGTACAAATGCGACCTAAAAGCCCACAGACTGGTCCACCAGGACGTCGACACGAGTTTGTTGCATCGCTGCGATAAATGCGATTATCGCACGAAGACGAAGAACAATCTGAAGTCTCATTACATCAGAAAGCACACGGACGATTACAGGTTCGCCTGCGAGCACTGCGGGAAACGTTTCAAGATGGAATGGGATCTGAAGTTTCACGTCGGGACGCACAGTGATTCGCGGCACATGTGCGATATCTGCGGGAAATTCTACACCAGCGATTATTCCCTTTACAAGCACAGGAAGGTGGCCCACTTGAACGAGTACAAGTTTCAGTGCAACGTTTGCAACAAGCGGCTCCTAACCCAGGAGAACTTGGACAATCATATGGGGCAACATAGCAGAACGTacgagtgcaaagagtgcGGAAAGGTGTTCGCGTCGAAGAGATACCTGGCGACGCACATGACCACGCACACAGGCGTGAAACCGTACACGTGTCACGTCTGCGAGAAAAATTTTCGCACTTCTCACATGAGGAACACGCATCTGTTGACGCATTCTGCGGAAAGGCCGCATATCTGCGATCTCTGCGGGCAGTCTTTCAAGAGGAGATATTATATGATCGAGCACCGTAGAAAACATCCGGACGCACATTTATCCTCGCCCCCCGTCCCTCTAGGGAAGAAGAAATGTACAAGCGAAACGGGAACCGACAATCTCGCGCCGTTTCAGACAGAGATTTCTTTGTAA
Protein Sequence
MFMMKEPPPNEESSSQAPKDSTVQPAKASQTEEKSKGKASVNDQFDDLDDTPLDFRKKQEQGRSKSPAKQASKKKLHTCEICYATFDRKSKHTRHMYKHSNSRPHKCSICSKGFKTSAHLNRHMEVHDEPVNLHACNLCDFKARTKPYLKIHYIRKHTVDYNYKCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKQFQCQTCKKKFKTQKNLECHMELHKIKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSGKPRARDPLEQTYLVVQNVDKYFLLPVDHDIIVKKESEEDPIVPDIEIKTEIRDDIPGKFAMKFFPEFPNRTDEKPCLIPKLSFQLPLQLPRNVLDAPLANFLRAPTTDSDDKMFFCDNCSKGFRSKRSLRIHMPTHSDARNFECTVCHQMLKTRRTLRRHMILHTDSSKVFKCSDCSFVSKRKHSLKRHQARMHTENSEYNCPHCPKMFKLSMDFNRHQRKHAVAPCRCEVCGKMYQNEHYLLMHRAKGKNCTTTYCMRYEDVKDEQDSSGSSSSPDTEKITVKATTRKRKREVTRVFKCSKCKWRFTTWRLLHKHIKRHFVSYKCETCGAVFKKSAQHLTPKNRATAVTQAKGKSKSPNGPSSILRRRISRRTSKIHKRRSNRHSKNSTRTTERTNISPRIADFEPMERNDKVSTCSKNSPNKKLLPRSNVCPHQVLNDRKDSAPQEDLYKMLRDGTYTCDICETTFEQKSKILRHITSKHSFHRPFKCSICDKTFKYKCDLKAHRLVHQDVDTSLLHRCDKCDYRTKTKNNLKSHYIRKHTDDYRFACEHCGKRFKMEWDLKFHVGTHSDSRHMCDICGKFYTSDYSLYKHRKVAHLNEYKFQCNVCNKRLLTQENLDNHMGQHSRTYECKECGKVFASKRYLATHMTTHTGVKPYTCHVCEKNFRTSHMRNTHLLTHSAERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPVPLGKKKCTSETGTDNLAPFQTEISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01065707;
90% Identity
-
80% Identity
-