Nfab014798.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada fabriciana
Gene Symbol
-
Assembly
GCA_907165295.1
Location
OU015689.1:19158415-19165941[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.15 15 6.4 6.7 1 23 77 99 77 99 0.97
2 25 1.9e-06 0.00018 21.9 2.8 1 23 105 127 105 127 0.98
3 25 0.068 6.5 7.5 1.9 1 23 134 157 134 157 0.94
4 25 6.8e-07 6.6e-05 23.3 1.7 1 23 163 185 163 185 0.98
5 25 1.1 1.1e+02 3.8 3.9 2 20 191 209 190 213 0.82
6 25 0.00092 0.089 13.4 5.9 1 23 220 242 220 242 0.97
7 25 2.8e-07 2.7e-05 24.5 0.9 1 23 246 268 246 268 0.99
8 25 0.038 3.6 8.4 1.1 1 23 274 296 274 296 0.94
9 25 5.8e-06 0.00056 20.3 0.6 1 23 302 324 302 324 0.99
10 25 9e-05 0.0087 16.6 1.7 1 23 467 489 467 489 0.93
11 25 0.00021 0.021 15.4 2.9 1 23 495 517 495 517 0.97
12 25 0.00036 0.035 14.7 4.5 1 23 524 547 524 547 0.97
13 25 9.3e-06 0.0009 19.7 3.8 1 23 553 575 553 575 0.98
14 25 0.015 1.4 9.6 1.5 2 20 581 599 580 601 0.91
15 25 1.5e-05 0.0014 19.0 5.5 1 23 651 673 651 673 0.99
16 25 0.00013 0.013 16.0 0.9 1 23 677 699 677 699 0.97
17 25 0.00015 0.015 15.9 1.0 1 23 867 890 867 890 0.96
18 25 3.6e-06 0.00035 21.0 4.1 1 23 896 918 896 918 0.98
19 25 0.018 1.7 9.4 7.8 1 23 927 950 927 950 0.94
20 25 0.0036 0.35 11.6 1.2 1 23 956 978 956 978 0.91
21 25 0.00014 0.013 16.0 2.0 1 23 983 1006 983 1006 0.96
22 25 0.0045 0.44 11.3 0.5 1 23 1012 1034 1012 1034 0.96
23 25 1.2e-07 1.2e-05 25.6 0.7 1 23 1038 1060 1038 1060 0.99
24 25 0.0017 0.17 12.6 7.4 1 23 1066 1088 1066 1088 0.99
25 25 7e-05 0.0067 17.0 3.2 1 23 1094 1116 1094 1116 0.97

Sequence Information

Coding Sequence
ATGTTCATGATGAAGGAGCCACCGCCTAACGAAGAATCGAGCTCCCAGGCCCCGAAGGACAGCACCGTTCAGTCGGCAAAGGCAAGCCAGACCGAAGAGAAGTCGAAAGAAAACGCGACCGGTAACGATCAATTCGATGATCTCGACGATACCCCGTTAGACTTCCGGAAGAAGCAGGAGCAAGGGAGGAGCAAGACCTCGGCCAAGCAGGCCACGAAGAAGAGGCTGCACACCTGCGAGATCTGTTACGCGACGTTCGATCGCAAGAGCAAGCACACGAGGCACATGTTCAAGCACAGCAACTCGAGGCCCCACAAGTGTGCAATTTGCTCCAAGGGGTTCAAAACGAGTGCCCACTTGAACAGGCACATGGAGGTACACGACGAGCCGGTGAATCTGCACGCGTGCAACCTCTGCGACTTCAAGGCTCGCACCAAGCCCTACCTGAAGATCCACTACATCAGAAAGCACACCGAGGACTACAATTACAAATGTGAGCAGTGCGGCAAGATGTTCAAGGTGCAGTCCGATTACACGACACACATGAAGGATCACGACACGGAGTCCTGCGTGTGCGATATCTGCGGGTCCTCCTATCCAAGCAAGAGCTCCTTGTACTTCCATAAGCATTACAAGCACAAGACGAAGGTGAAACAGTTTCAGTGTCAGACTTGCAAAAAGAAGTTCAAGACGCAGAAGAATTTGGAGTGTCACATGGAGCTGCATAAGATTAAGTATGTATGCGAGCAGTGCGGCATGGAGTTCAAGAGTAAATACGGCCTAACCAAGCACCTGAGGACGCATTCCGGGGAGAAGTCCTACCTGTGTGCGATTTGTGGGAAAACCTTCGGATGTCTCAGCTCGCAGAAGATTCACCTGTTAACCCACGTGGGCGAGCGACCGTACGTTTGCGATATTTGCGGCCAGAGCTTCACGCAGAGGTCGCCGATGATGCTGCACCGCAGGAAACACCCAGGTGTCCATCCACCGCCCCCTCCAATTAAGATCACGAACCTGCTGCACGGTGTGCAGGATAAGATAATTGTGAACAAGAGCGGCAAGCCTCGAGCTCGTGATCCTCTAGAACAAACGTACCTCGTCGTGCAAAACGTCGACAAGTACTTTCTCCTGCCTGTCGATCACGATATTATAGTGAAAAAGGAATCAGAAGAAGATCCCATCGTACCTACCATAGGAATCAAGACCGAAATTCAAGACGACATTCCCGGGGAGTTGGCAATAAAACCGTTCCCAGAATTCCCCAACAGGACAGACGAGAAGCCTTGTTTGATTCCACAGCTGTCTTTTCATCTACCCCTACAGTTTCCTCGGCACGTCGTGAATGCCTCCTCGGCGAACTTCCTAAGAACACCGACGGCAGACAGCGAGGACAAGCTGTTCTTTTGCGACAACTGTTCCAAGGGGTTCAGGAAGAAGAGCTCTTTGCGCATACACATGCCGACCCATAGCGACGCCCGTAACTTCGAGTGCACGGTGTGCCATCAGATGCTGAAGACCAGACGAACACTTCGGCGCCACATGATTCTACACACCGACAGCGGTAAGATGTTCAAGTGCTCCGACTGCAGTTTTGTGTCGAAAAGGAAGCACAGCTTGAAGCGTCATCAGGCCAGGATGCACAGCGAGTACCCCGAGTACAACTGCCCCCACTGCCCAAAGATGTTCAAGCTCAGCATGGACTTTAACAGGCATCAACGAAAGCACGTGGTCGCGCCGTGTCGCTGCGAGGTGTGCGGCAAAATGTATCAAAACGAGCACTATCTTCTGATGCATCGAGCCAAGGGGAAGAATTGCACGACCACTTACTGCATGCGTTACGAGGATGTCAAAGATAACCAGGACTCGTCCGGGAGCTCCTACAGCCCGGAGACCGAAAAGATCACGGTGAAAGCAACGACCATGAAGAGGAAGAGAGAGGTGACGAGGGTGTTCAAGTGTAGCAAGTGCAAATGGCGATTCACCACTTGGAGATTGCTTCACAAACATATAAAACGGCATTTCGTTAGCTACAAGTGCGAGACTTGCGGAGCTGTGTTCAAGTACAGAGCCTCGTTTCTGAAACACGAAAGCTCGCACAAGGTAACAGCCTACGAAGAGGAAGAAGAAAGAAATGAAACGGAACACGAAGATAAAACTGCACGAAGAATCGTCGAAGGCATTGAGAGAGAATTAATCAGTGAAAAGTTTGAACCCGAAAGACAAAAGAAATCACCGCAGCATTTAACCCCGAAGAACAGAGCCACTGCCGTTACTCAAGCAAAAGACAAATTAAAATCGCCGAAGAAACCATCGAGTATCCTTCGAAGAAGAATCTCTCGCCGAGCCTCGAATATCCAAAAACGAAGAAGTAACAGACACTCGAACAATTCTACTCGTGCCACCGAACAAACAAATATTGCTCCCCGCATTGCAGACTTCGAACCGATGGAAAGAAACGACGAAGTGAGAACTTGCTCGAAGAATTCGACGAACAAAAAATTGCTACCGCGTTCCAACGATTGCCCCCACAACGTATTGAACGATAGGAAAGATTCCGCGTCGCAAGAAGATTTGTACAAGATACTACGCGACGGGACGTACACTTGCGACATTTGCGAAACAACGTTCGAGCAGAAGAGCAAAATTCTTCGTCACATCACCAGCAAGCACAGTTTCCATCGGCCCTTCAAATGTTCCATCTGCGACAAAACGTTCAAGTATAAATGCGACCTAAAAGCCCACAGACTGGTCCATCAGGACGTCGACACGAGTTTGTTGCATTGCTGCGACAAATGCGATTACCGCACGAAGACGAAGAACAATCTGAAGTCTCATTACATCAGAAAGCACACGGACGATTACAGGTTCGCCTGCGAGCACTGCGGGAAACGTTTCAAGATGGAATGGGACCTGAAGTTTCACGTCGGGACGCACAGTGATTCGCGGCACATGTGCGATATCTGTGGGAAATTTTACACCAGCGATTATTCCCTTTACAAGCACAGAAAGGTGGCCCACTTGAACGAGTACAAGTTTCAGTGCAACGTTTGCAACAAGCGGCTCCTCACCCAGGAGAATTTGGACAATCATATGGGACAACATAGCAGAACGTACGAGTGCAAAGAGTGTGGAAAGGTGTTCGCGTCGAAGAGATACCTGGCGACGCACATGACCACGCACACAGGCGTGAAACCGTACACGTGTCACGTTTGCAAGAAAAATTTTCGCACGTCTCACATGAGGAACACGCATCTGTTGACGCATTCTGCGGAAAGGCCGCATATCTGTGATCTCTGTGGGCAGTCCTTCAAGAGGAGATATTATATGATCGAGCATCGTAGGAAACATCCGGACGCACATTTATCCTCGCCCCCCGTCCCTCTAGGGAAGAAGAAATGTACAAGCGAAACCGGAACTGACAATCTTGCTACGTTTCAAACAGAGATTTCTTTGTAA
Protein Sequence
MFMMKEPPPNEESSSQAPKDSTVQSAKASQTEEKSKENATGNDQFDDLDDTPLDFRKKQEQGRSKTSAKQATKKRLHTCEICYATFDRKSKHTRHMFKHSNSRPHKCAICSKGFKTSAHLNRHMEVHDEPVNLHACNLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKQFQCQTCKKKFKTQKNLECHMELHKIKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSGKPRARDPLEQTYLVVQNVDKYFLLPVDHDIIVKKESEEDPIVPTIGIKTEIQDDIPGELAIKPFPEFPNRTDEKPCLIPQLSFHLPLQFPRHVVNASSANFLRTPTADSEDKLFFCDNCSKGFRKKSSLRIHMPTHSDARNFECTVCHQMLKTRRTLRRHMILHTDSGKMFKCSDCSFVSKRKHSLKRHQARMHSEYPEYNCPHCPKMFKLSMDFNRHQRKHVVAPCRCEVCGKMYQNEHYLLMHRAKGKNCTTTYCMRYEDVKDNQDSSGSSYSPETEKITVKATTMKRKREVTRVFKCSKCKWRFTTWRLLHKHIKRHFVSYKCETCGAVFKYRASFLKHESSHKVTAYEEEEERNETEHEDKTARRIVEGIERELISEKFEPERQKKSPQHLTPKNRATAVTQAKDKLKSPKKPSSILRRRISRRASNIQKRRSNRHSNNSTRATEQTNIAPRIADFEPMERNDEVRTCSKNSTNKKLLPRSNDCPHNVLNDRKDSASQEDLYKILRDGTYTCDICETTFEQKSKILRHITSKHSFHRPFKCSICDKTFKYKCDLKAHRLVHQDVDTSLLHCCDKCDYRTKTKNNLKSHYIRKHTDDYRFACEHCGKRFKMEWDLKFHVGTHSDSRHMCDICGKFYTSDYSLYKHRKVAHLNEYKFQCNVCNKRLLTQENLDNHMGQHSRTYECKECGKVFASKRYLATHMTTHTGVKPYTCHVCKKNFRTSHMRNTHLLTHSAERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPVPLGKKKCTSETGTDNLATFQTEISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01070508;
90% Identity
-
80% Identity
-