Nruf003909.1
Basic Information
- Insect
- Nomada ruficornis
- Gene Symbol
- -
- Assembly
- GCA_951802695.1
- Location
- OX637848.1:2981968-2982447[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-09 1.3e-05 25.3 0.0 6 42 20 56 16 58 0.83 2 2 7.5 1e+04 -3.2 0.0 21 26 93 98 92 99 0.86
Sequence Information
- Coding Sequence
- ATGGTGAGGAATTTTAAAAAGAGTACGAATCGTGGGGACATTCCTCCTGATGTTATGCTGAGAACAGTAAGGAGGGTTAAAATTGGGCACATTTCAATTCGCCAAGCAGCTAAGGatttcaaaataaattatgGCACATTATCTAGATATGTtcaaaaaattgaagaaacgGACATAAATGGTAACGTTAACGTTCCTTCAATACCTGTCGGTTATGTAAAAATTCGGCAGGTATTTTCAGCTGGAGCAGTTAATGAGCTTCTCAATTATGTGCTACAAgcatcaaatatttattctggTTTAAGTCCAAAAGAGCTATCAAAATTGGCGTATGAAGTAGGAGAAGTCAATAATTTGAAAATGCCCCAAAACTGGATTACCAACAAAATGGCAGGTGCAGACTGGCTAAATTCGTTCATGGAGAGGAATCCTACTTTGTCAATTACAACGCCAGAGGCTACAAGCTTAGGAAAAGCCTGA
- Protein Sequence
- MVRNFKKSTNRGDIPPDVMLRTVRRVKIGHISIRQAAKDFKINYGTLSRYVQKIEETDINGNVNVPSIPVGYVKIRQVFSAGAVNELLNYVLQASNIYSGLSPKELSKLAYEVGEVNNLKMPQNWITNKMAGADWLNSFMERNPTLSITTPEATSLGKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066174;
- 90% Identity
- iTF_01066178;
- 80% Identity
- -