Nfer003860.1
Basic Information
- Insect
- Nomada ferruginata
- Gene Symbol
- -
- Assembly
- GCA_963583965.1
- Location
- OY757215.1:4082559-4083032[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 0.00024 21.2 0.0 15 42 29 56 16 58 0.81 2 2 4.2 4.5e+03 -2.1 0.0 21 26 91 96 89 107 0.68
Sequence Information
- Coding Sequence
- ATGGTGAGGAAGTTTAAAAACAGTACGAATCGTGGGGACATTCCTCCTGATGTTATGCTGAGAACAGTAAGGAGGGTTAAAATTGAACACATTTCAATTCGTCAAGCAGCTAATGAtttcaaaataaattattgcacatTGTCTAGATATGTtcaaaaaattgaagaaacgGACATAAATGGTAACGTTCCTTCAATACCTGTCGGTTATGTAAAAAATCGGCAGGTATTTTCAGCTGGAGCAGAAAATGAGCTTCTCAATTATGTGCTACAagcatcaaatatttattctggTTTAAGTCTAAAAGAGCTATCAAAATTGGCGTATGAAGTAGGAGAAGTCAATAATTTGAAAATGCCCCAAAACTGGATTACCAACAAAATGGCAGGTGCAGACTGGCTAAATTCGTACATGAAGAGGAATCCTACTTTGTCAATTACAACGCCAGAGGCTACAAGCTTAGGAAGAGCCTGA
- Protein Sequence
- MVRKFKNSTNRGDIPPDVMLRTVRRVKIEHISIRQAANDFKINYCTLSRYVQKIEETDINGNVPSIPVGYVKNRQVFSAGAENELLNYVLQASNIYSGLSLKELSKLAYEVGEVNNLKMPQNWITNKMAGADWLNSYMKRNPTLSITTPEATSLGRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066174;
- 90% Identity
- iTF_01070286;
- 80% Identity
- -