Nruf013165.1
Basic Information
- Insect
- Nomada ruficornis
- Gene Symbol
- -
- Assembly
- GCA_951802695.1
- Location
- OX637854.1:3056379-3058010[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-09 1e-05 25.6 0.0 4 42 18 56 16 58 0.89 2 2 4.3 5.9e+03 -2.5 0.0 25 30 366 371 365 371 0.86
Sequence Information
- Coding Sequence
- ATGGTGAGGAATTTCAAAAAGAGTACAAATCGTGGGGACATTCCTGCTGACGTTATGCTGAGAGCAGTAAGGAGGGTTAAAATTGAGCACATATCAATTCGTCAAGCAGCTAATGatttcaaaataaattatcGTACATTATCTAggtatgttaaaaaaattgaagaaacgGACGTAAATGGTAATGTTGACGTTCCTTCAATACCTGTCGGTTATGCGAAAAATCGGCAGGTATTTTCAATTGGAGCAGAAAATGAGCTGGTCAATTATGTGCTACAAGCATCAAACATTTATTTTGGTTTAAGTCCAAAAGAGCTGAGAAAATTGGCGTATGAAGTAGGAACAGCCAATAATTTAAAGATTCCCCAAAACTGGATTACCAACAAAATGGCAGGTGCAGACTGGCTAAACTCTTTTATGAAGAGGAATCCTACTTTGTCAATTAGAACGCCAGAGGCTACAAGCTTAGGAAGAGCCTCAAGTTTCAACCGTCATAACGTTGCAAAATTTTTTGGAAATCTAAAAAGGGTGATGGCCGAATTTAAGTTTCTTCCTCAAGATATTTGGAATATGGATGAAACTGGGATTACTACAGTCCAAAGACCCAATAAAGTTATAGCCCGAAAAGGCTTTAAGCAAGTGGGATCCATTGTTTCAGCCGAGAGGGGAACTTTGGTTACCCTAGCTGCAGCAGTATCGGCAGCAGGAAATCATCTACCCCCATTATTTGTTTTTCCGCGGGTTCATTATAAGGATCATTTTATTGCCAATGCCCCCCCAGGGTCCAAAGGATGTGCCAATCAATCAGGCTGGATGCTGGAGTCCCATTTTTTACACTTTTTGACCCATTTCGTGTCAATTGTTCGCTGCACTCGAGAAAAACCGGTGTTGTTAGTGTTAGACAACCATGGCTCCCACCTCAGTATTGAAGGTCTCCGCTTTGCCAAAGAAAATGGCATTGTCATGTTATCTTTTCCTCCTCATTGTTCCCATCGACTCCAACCTCTTGACAAGACTATATTTGGTCCattcaaaaaatatattaacacTGAATGTGACTCATGGATGTTGAACCATCCAGGGAAAACCATGACGATATATGATATCCCTAAAATCGTCGCTGCAGCTTTTCCTCTGGCAATGACTCCTTCGGCAATTCAGTCTGGTTTTCGTGCAACAGGGATATTTCCGTTTAACGAAAACATCTTTACCGATGTAGACTTTCTTCCCTCATATGTTACAGACCGGCCATTAAACCCTGTTTGTGAGGAAATTATTGGAAATTCTGAAGTTGAAAACACCGAGAAACAAACTTGTGACTACTTCgcagaaaaattaaattgtgaACCGGAATTTGTACCAGAAGCAGTCCCTGGGTGCTCGAAGGACAGGATACCCTTAATTGTTTCTCCCTCCATTCTGCGCCCTTTACCAAAAGCAGGCCTTAGAAAAAAGACAAGAGGAAATTATCGTACGAGGACAACAGAAATTTTGACAGACAGTCCTGTAAAGAAGAGACTGGAAGAGGAGCATCAAATTAAACAGGCAAACAAAATTAGAAAGGAGAGTCGTCAAAGCAAGAGcggcaaaaaaagaaaagattataagaagaagaagcttGTTCTTGTGTAG
- Protein Sequence
- MVRNFKKSTNRGDIPADVMLRAVRRVKIEHISIRQAANDFKINYRTLSRYVKKIEETDVNGNVDVPSIPVGYAKNRQVFSIGAENELVNYVLQASNIYFGLSPKELRKLAYEVGTANNLKIPQNWITNKMAGADWLNSFMKRNPTLSIRTPEATSLGRASSFNRHNVAKFFGNLKRVMAEFKFLPQDIWNMDETGITTVQRPNKVIARKGFKQVGSIVSAERGTLVTLAAAVSAAGNHLPPLFVFPRVHYKDHFIANAPPGSKGCANQSGWMLESHFLHFLTHFVSIVRCTREKPVLLVLDNHGSHLSIEGLRFAKENGIVMLSFPPHCSHRLQPLDKTIFGPFKKYINTECDSWMLNHPGKTMTIYDIPKIVAAAFPLAMTPSAIQSGFRATGIFPFNENIFTDVDFLPSYVTDRPLNPVCEEIIGNSEVENTEKQTCDYFAEKLNCEPEFVPEAVPGCSKDRIPLIVSPSILRPLPKAGLRKKTRGNYRTRTTEILTDSPVKKRLEEEHQIKQANKIRKESRQSKSGKKRKDYKKKKLVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01069579;
- 90% Identity
- iTF_01065488;
- 80% Identity
- -