Npan019067.1
Basic Information
- Insect
- Nomada panzeri
- Gene Symbol
- -
- Assembly
- GCA_951802685.1
- Location
- OX637841.1:2464429-2466060[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-09 7.5e-06 26.1 0.0 2 42 16 56 15 58 0.91 2 2 4.5 6.1e+03 -2.5 0.0 25 30 366 371 365 371 0.86
Sequence Information
- Coding Sequence
- ATGGTGAGGAATTTCAAAAAGAGTACAAATCGTGGGGACATTCCTCCTGATGTTATGCTGAGAGCAGTAAGGAGGGTTAAAATTGAGCACATATCAATTCGTcaagcagctaatgatttcaGAATAAATTATCGTACATTATCTAgatatgttaaaaaaattgaagaaacggACGTAAATGGTAATGTTGACGTTCCTTCAATACCTGTCGGTTATGCAAAAAATCGGCAGGTATTTTCAATTGGAGCAGAAAATGAGCTGGTCAATTATGTGCTACAAGCATCAAACATTTATTTTGGTTTAAGTCCAAAAGAGCTGAGAAAATTGGCGTATGAAGTAGGAGCAGCCAATAATTTAAAGATTCCCCAAAACTGGATTATCAACAAAATGGCAGGTGCAGACTGGCTAAACTCTTTTATGAAGAGGAATCCTACTTTGTCAATTAGAACGCCAGAGGCTACAAGCTTAGGAAGAGCCTCAAGTTTCAACCGCCATAACGTTGGAAAATTTTTTGGAAATCTAAAAAGGGTGATGGACGAATTTAAGTTTCTTCCTCAAGATATTTGGAATATGGATGAAACTGGGATTACTACAGTCCAAAGACCCAATAAAGTTATAGCCCGAAAAGGCTTTAAGCAAGTGGGATCCATTGTTTCAGCCGAGAGGGGAACTTTGGTTACCCTAGCTGCAGCAGTATCGGCAGCAGGAAATCATCTACCCCCATTATTTGTTTTTCCGCGGGTTCATTATAAGGATCATTTTATTGCCAATGCCCCCCCAGGGTCCAAAGGATGTGCCAATCAATCAGGCTGGATGCTGGAGTCccattttttacattttttgacCCACTTCGTGTCAGTTGTTCGCTGCACTCGAGAAAAACCGGTGTTGTTAGTGTTAGACAACCATGGCTCCCACCTCAGTATTGAAGGTCTCCGCTTTGCCAAAGAAAATGGCATTGTCATgttatcttttcctcctcATTGTTCCCATCGACTCCAACCTCTTGACAAGACTATATTTGGTCcattcaaaaaatatattaacacTGAATGTGACTCATGGATGTTGAACCATCCAGGGAAAACCATGACGATATATGATATCCCTAAAATCGTCGCTGCAGCTTTTCCTCTCGCAATGACTCCTTCGGCAATTCAGTCTGGTTTTCGTGCAACAGGGATATTTCCGTTTAACGAAAACATCTTCACCGATGTAGACTTTCTTCCCTCATATGTTACAGACCGGCCATTAAACCCTGTTTGTGAGgaaattattggaaattctGAGGTTGAAAACACCGAGAAACAAACTTGTGACTACTTCGCAGAAGAATTAAATTGTGAACCGGAATTTGTACCAGAAGCAGTCCCTGCGTGCTCGAAGGACAGGATACCCTTAATTGTTTCTCCCTCCATTGTGCGCCCTTTACCAAAAGCAGGCCTTAGAAAAAAGGCAAGAGGAAATTATCGTACGAGGACAACAGAAATTTTGACAGACAGTCCTGTAAAGAACAGACTGGAAGAGGAGCATCAAATTAAACAggcaaacaaaattaaaaaggaGAGTCGTCAAAGCAAGAGcggcgaaaaaagaaaagatcacaagaagaagaagctcgTTCTTGTGTAG
- Protein Sequence
- MVRNFKKSTNRGDIPPDVMLRAVRRVKIEHISIRQAANDFRINYRTLSRYVKKIEETDVNGNVDVPSIPVGYAKNRQVFSIGAENELVNYVLQASNIYFGLSPKELRKLAYEVGAANNLKIPQNWIINKMAGADWLNSFMKRNPTLSIRTPEATSLGRASSFNRHNVGKFFGNLKRVMDEFKFLPQDIWNMDETGITTVQRPNKVIARKGFKQVGSIVSAERGTLVTLAAAVSAAGNHLPPLFVFPRVHYKDHFIANAPPGSKGCANQSGWMLESHFLHFLTHFVSVVRCTREKPVLLVLDNHGSHLSIEGLRFAKENGIVMLSFPPHCSHRLQPLDKTIFGPFKKYINTECDSWMLNHPGKTMTIYDIPKIVAAAFPLAMTPSAIQSGFRATGIFPFNENIFTDVDFLPSYVTDRPLNPVCEEIIGNSEVENTEKQTCDYFAEELNCEPEFVPEAVPACSKDRIPLIVSPSIVRPLPKAGLRKKARGNYRTRTTEILTDSPVKNRLEEEHQIKQANKIKKESRQSKSGEKRKDHKKKKLVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01070285; iTF_01065488;
- 90% Identity
- iTF_01065488;
- 80% Identity
- -