Npan008504.1
Basic Information
- Insect
- Nomada panzeri
- Gene Symbol
- -
- Assembly
- GCA_951802685.1
- Location
- OX637833.1:13563318-13567138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 12 7.1 0.0 2 20 43 61 42 63 0.93 2 19 9.6e-05 0.011 16.7 0.5 1 21 80 100 80 101 0.95 3 19 6.9e-05 0.0078 17.1 2.1 2 23 137 158 136 158 0.94 4 19 0.00018 0.02 15.8 2.2 1 23 162 184 162 184 0.97 5 19 0.00017 0.019 15.9 0.6 3 23 192 212 191 212 0.97 6 19 1.7e-05 0.0019 19.0 3.4 2 23 219 240 218 240 0.96 7 19 0.12 13 7.0 2.6 1 19 249 271 249 273 0.73 8 19 0.17 19 6.5 0.2 3 23 279 298 278 298 0.95 9 19 0.59 66 4.8 2.5 3 13 306 316 305 318 0.89 10 19 0.015 1.7 9.8 2.8 1 23 441 463 441 463 0.98 11 19 4.8e-05 0.0053 17.6 0.4 2 23 473 495 473 495 0.95 12 19 0.00014 0.016 16.1 4.9 1 23 501 523 501 523 0.98 13 19 0.035 3.9 8.6 0.4 1 23 527 549 527 549 0.97 14 19 1e-05 0.0012 19.7 1.7 3 23 557 577 555 577 0.97 15 19 1.7e-05 0.0019 19.0 0.8 1 23 583 605 583 605 0.98 16 19 0.079 8.9 7.5 0.9 1 23 611 633 611 633 0.97 17 19 3.8e-07 4.3e-05 24.2 0.1 2 23 640 661 639 661 0.97 18 19 8.3e-07 9.3e-05 23.2 0.8 1 23 667 689 667 689 0.98 19 19 1.2e-07 1.4e-05 25.8 1.9 1 23 695 717 695 717 0.99
Sequence Information
- Coding Sequence
- ATGACGATACCATCCAGGTCCAATCGATCTCGTACCGTTAAATCGCCGAAAGAGGAGGCTCGTTCCTTTGTCGTTGTTGCGGACGTTATCGATAACGCGCGGGTCGCTCGAGAAACGACGCCGCAACGATGCGGGTCCTGTGACGAGGAGTTCGTCACGGAGGCTGCTCTGTTGGTCCATAGAACCGAGCAGTCGATCCTGCGTACTCGGGAGTCGTTAAGGAAAGCGGCGAAAAAGTACACGTGCGACGTGTGCCGCGAGAGTTTCGCGAGGAAAATGCAACTGTTCAGGCACAGTCGGCTTCGATGCAACGACTCGACAACGATCGAGGCTGGCAAGCAGCCAAAAACGAAAGAGAAAGCGACGAGATCGAAACGAAAAGAGCAGAACGTTTCCACGGGCCCGATCGAGTGCAACGTTTGCCACAAGGTTTTCAAGAAGAAGAAGTATTTAAATGTTCACAAAGCGTTGCACGGCTCGCCTCACATTTGCCACGTGTGCGGCGCCAAATTGACTTCCGAGTATTATCTGAAGATACATATCAGGAGGCACAACAAAGAGTTCACGGAGTTCTGCGAGGTTTGCAATAAGGGGTTCTACTTGAAGGCGACGCTGAAAACCCATATGAGCGTACACAGCGCGGAAAAGCCCTGCGCTTGCGAGATTTGCCATAAGTCGTTCGGCAATCGAGTTTATCTGAGGAGCCACATGAAGATACACAGCCAGCCGGAGAGCAGGAAGAAGTACAGATGCGACATTTGCGGGTTCGAAACGTTTTATAGTTATTGCTACAAGGAACACTTGTGGACACACACGGGGGAAAGTCGGGTGGCTTGCGAGGTCTGCGGAAAGCTGATACGAAGGCAGTACATGAAGATTCATATTAGGATACACACCGGAGAGAAACCGGAGATCTGTGAGTTCTGTGGGAAAGCATTTAGCTCGAGGAAGTGCCAGGTGATCAGCATCGAGCAAACGAAAATAGAATCGATAGAAACGCTCGAGGATATGGGGTTGGTCAGGTACGAAAGTGACGTTTGTACAGTGGAAGAGTTCGAACAGATCAGCCATCAGGAAATAGTGACCGAAGCCTTAGAATACACTGTCGATACAGAAGTCGTAAAAATCGTgcaagaagaggaggaagacgaagaagaagaagaagatgatgatgatgaagaagaagaagaggaggatgaggaggaggaggaggaaggagaagtagacgaagaagaagatcaagaACCAAACCAAATAAATGATGGTAACaaccatttaaataataaatgtcaAACGAACAGCAGGAAATGTACTGTGATATACGAATGCGACATTTGTAACAAAAGGATGCGCAAGAAACTGCAATTCCTCAAGCACAGACAGAACCACGATAGGAACATCGTGGAAATCGGCGGTAGATGCGATGAATGCGACAAGACGTTCGTGGACGATGAGAAATTAAAGAAGCACGTAATCAAGGTGCACCAGAAGGAGAAGCCGTTCCAATGCGTGCTGTGCAACAAGTGTTTCAAGACCGAGGAGTTCCTGAAGACACACCTGAAGCAGCACAACAAACGTTTCACCTGCGACATATGCGGCATCTCGAAGGTCTCCGGATACGATCTGCGTCTGCACAAGAAGAAGCACAACGAGGAATACGTGACCCACTGCGAGATCTGCGACAAGGGCTTCTACACGAACCAGACCCTGGAGCGTCACTTGCTCACGCACACAGGTGAAAAACCTTTCGTCTGCAAGGTGTGCCATACACCGTACGCGAGTGCTGCTTATCTGAACACGCACATGAAATCGCACGGCGAGCGTGAGAAACACAAGTGCAATATTTGTAACTTCGAGAGCTACTGGAAGGCCGCGCTGAAGGTGCATCTGAAAATACACACTGGCGAGAATCTGATCACCTGCGAGATCTGCGGTAAATCGGTGTCAAGCAAGGCGTACCTGCAGATCCACATGCGTATACATTCGGGGGAGAAGCCGCACGTTTGCGAAATGTGCGGCAAAGCTTTCAGCGTACGAAAATACTTGATCGTGCATCTGAGAACTCACACAGGCGAGAGGCCGTACGAGTGCAAGGTGTGCCAGAAAAGGTTCACGCAGCAGGGTTCGTTGAATTCCCATATGAAGTCGCATAACGAAAGAAAATGA
- Protein Sequence
- MTIPSRSNRSRTVKSPKEEARSFVVVADVIDNARVARETTPQRCGSCDEEFVTEAALLVHRTEQSILRTRESLRKAAKKYTCDVCRESFARKMQLFRHSRLRCNDSTTIEAGKQPKTKEKATRSKRKEQNVSTGPIECNVCHKVFKKKKYLNVHKALHGSPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSAEKPCACEICHKSFGNRVYLRSHMKIHSQPESRKKYRCDICGFETFYSYCYKEHLWTHTGESRVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQVISIEQTKIESIETLEDMGLVRYESDVCTVEEFEQISHQEIVTEALEYTVDTEVVKIVQEEEEDEEEEEDDDDEEEEEEDEEEEEEGEVDEEEDQEPNQINDGNNHLNNKCQTNSRKCTVIYECDICNKRMRKKLQFLKHRQNHDRNIVEIGGRCDECDKTFVDDEKLKKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICDKGFYTNQTLERHLLTHTGEKPFVCKVCHTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEMCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_01065713;
- 80% Identity
- -