Basic Information

Insect: Nomada lathburiana
Gene Symbol: -
Assembly: GCA_963667235.1
Location: OY763907.1:12410506-12415164[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.54 42 4.9 1.5 1 23 424 446 424 446 0.94

2 18 0.0012 0.09 13.3 0.7 2 23 481 502 480 502 0.98

3 18 0.00011 0.0086 16.5 1.0 1 23 613 635 613 635 0.97

4 18 0.0009 0.069 13.6 0.4 2 23 639 660 638 660 0.96

5 18 5.5 4.2e+02 1.7 0.3 1 19 745 763 745 765 0.80

6 18 0.00048 0.037 14.5 0.7 1 21 774 794 774 798 0.92

7 18 0.0074 0.57 10.8 4.2 2 23 876 897 875 897 0.95

8 18 0.00025 0.019 15.4 4.2 1 23 954 976 954 976 0.96

9 18 0.00032 0.025 15.1 0.7 1 20 981 1000 981 1002 0.94

10 18 0.048 3.7 8.2 0.5 2 23 1013 1034 1013 1034 0.97

11 18 3.3e-05 0.0025 18.2 0.6 2 23 1073 1094 1072 1094 0.97

12 18 3e-05 0.0023 18.3 1.6 1 23 1099 1121 1099 1121 0.95

13 18 0.00011 0.0083 16.5 3.0 1 23 1127 1149 1127 1149 0.98

14 18 5.2e-06 0.0004 20.7 0.4 1 23 1165 1187 1165 1187 0.95

15 18 4.3e-07 3.3e-05 24.1 0.6 1 23 1193 1215 1193 1215 0.99

16 18 4.6e-05 0.0036 17.7 0.2 1 23 1221 1243 1221 1243 0.97

17 18 0.00017 0.013 15.9 4.1 1 23 1249 1271 1249 1271 0.96

18 18 0.012 0.93 10.1 0.4 1 20 1277 1296 1277 1298 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.54	42	4.9	1.5	1	23	424	446	424	446	0.94
2	18	0.0012	0.09	13.3	0.7	2	23	481	502	480	502	0.98
3	18	0.00011	0.0086	16.5	1.0	1	23	613	635	613	635	0.97
4	18	0.0009	0.069	13.6	0.4	2	23	639	660	638	660	0.96
5	18	5.5	4.2e+02	1.7	0.3	1	19	745	763	745	765	0.80
6	18	0.00048	0.037	14.5	0.7	1	21	774	794	774	798	0.92
7	18	0.0074	0.57	10.8	4.2	2	23	876	897	875	897	0.95
8	18	0.00025	0.019	15.4	4.2	1	23	954	976	954	976	0.96
9	18	0.00032	0.025	15.1	0.7	1	20	981	1000	981	1002	0.94
10	18	0.048	3.7	8.2	0.5	2	23	1013	1034	1013	1034	0.97
11	18	3.3e-05	0.0025	18.2	0.6	2	23	1073	1094	1072	1094	0.97
12	18	3e-05	0.0023	18.3	1.6	1	23	1099	1121	1099	1121	0.95
13	18	0.00011	0.0083	16.5	3.0	1	23	1127	1149	1127	1149	0.98
14	18	5.2e-06	0.0004	20.7	0.4	1	23	1165	1187	1165	1187	0.95
15	18	4.3e-07	3.3e-05	24.1	0.6	1	23	1193	1215	1193	1215	0.99
16	18	4.6e-05	0.0036	17.7	0.2	1	23	1221	1243	1221	1243	0.97
17	18	0.00017	0.013	15.9	4.1	1	23	1249	1271	1249	1271	0.96
18	18	0.012	0.93	10.1	0.4	1	20	1277	1296	1277	1298	0.89

Sequence Information

Coding Sequence: ATGGACACCGTAGAGATAAATACGACTGTTTCAACACAAAACGAAGGGCAGGGCATCGTTTCGACGGTCGAAATATGCCGTGTTTGCCTCCTTGGGAACTTGGTGATGCGGGATTTGTTTCTCGAAAGCGAGGTCGCTTCACTTTCAGCAAAAGCGATGAGTTTCGCTAATGTAAAGATGTTACCTGGAGACGGCCTACCAACACATGTGTGTTGCATGTGTGCCGACAAACTGGAGTCTGCGTACGACTTTAAGCTACAGGTTGAACAGGCAGACACAGTTCTTAGGGAAAGGTTTGTTACCATGCATATCAAAGAGGAGTTGTTTTTCGATGATGTTGAGGTACACTTGGAGTCGGGAGAGCAAAACGACAGTATCGGCGAGATGCAGGTGGAGAATCATTATCAAAGTTCTGCAGAAAGCCTCACATCGATGTCTCAGGAGGAGAAAACATCGCTTCTGAAGGATCAATTAGATTTGTTGCGAGTGGATAAATTGGACGAGCAAGAGCAAGCAATGAGAGAACAGAATAACAGCGCCATAATAGAGGAAGTAATCGTCCAAGCGATTCCCATGGAGCAGACATCGGAAGGCTGTCTAAATCaagacgaggaagaagaagaagaagaacaagaagaacaagaagaacaagaacaagaagaagataGCATTGGAGGCATAGCAgtagatttaaaaaatgatgtaATCCTGAAACACGAAAACGAAAATGGCGACTGTCTGGGTAGTATTCAAACTGTGGAGCACGATTATATATTACACCAAGGGTGTATGTTATCCAACGAGCAGCAGCAAGAACAGCAACAAGAGGAAGAAgggcagcagcagcagcaaggACAAGAAGACGaaggagaagaggaagaggaaggagtggtggaggaagaggaggaggaggaggaggaggaagaggaggcaGAGGCAGAGGAagaacaacagcaacaacagttGACGTCTGTAGAATCGCGTGAACGCGACGATTGCACTGAATACGTAAATTTGTTGGTAAAAGCAGCCGTCGCGACGAACCAAGGAGGCGAAGAGGAGACGGAAAAATTTAATGCTACGATGGTCGATGTTAAAGCTGAGTTACAGACACAGTTCCAAACCGAGAGCAGAAGAAGTAAACGTAAGCTAGTCCGGCGTAATCTTGAAACGGACCGAGATTCCGAcgaggaaaattatttcgagaATTTGAATTTAAGTTCGCGACTGAAGAAAACGCCggtttttaataaatcggagaaaattttttttttatgttactTGTGTGACGAAGAATTTCTGTCAAAAAACGTTTTAAAGGAACATATGCATTCGCACGAAGAAGTGCGAAGAGCGCTTTCGTTGAAGAAAAACGTTGACACACCGCAAAAGAGTGCGAGCACCGTCGCAAAGTCACCCCCATCGGGTAAAAGATCGAACAAGTGTCCGTACTGCGGCaagcaatatatatatataatctcGTATAGTAAGCATTTGAAAAAACATGAAAGGGAGAAGGAGGCGGGAAAGGAGGAAACAATGCCCTTAGAAATCTCGTTTCACGAAGATGAACACAGTTTAGATCTAGATGATTACAAAGAAGAACGCCACCATTTGGATGGGGAATTTCCTCTCCGGAAGAGAGGAAAACAGAAAAGGGAAAGCGAAGGGATCGCAAAGATAGGTAGAGAGGTGATGAAGGAAGAGGTAGAGGATCAGCTGGAGAATGAAAGTGAGGAGAGGAGAAACGGGAGAGAGGGAGTACACGTGGACGATAGCGAGGATAATTTGTCTAGGGAGGAAGAATTGGAGGTTTGCTGCAGCCGCAGAGAAATGTTTTCGTGCGAGAAATGCCCGGAGAAATTTGACAGGAAGCGCGGTTTACGGAAACATGAGATTTCGCATGCCACGCTCAAGTGTAACGTATGCGAGGAGGAGTTTGAGTCGCTGGAAAAATTACGAAAGCATCGAATGGGGCACGTTGTCGAAGGCGTGTTAACTGAGCAGGATCTCGAAGCGGATAGGGATAGGAATGGGGATAGAGATAGGGATAGGGACAGGGATAAGGATATGGACAAAGAAAGCGAAGCGGCCAAAGATGAGAGCGGAGTGAAAGAGTGTGTgggaaacgaggaagaagCAGCGGTAACTGTCGCGACAGGAGGGTCGTTGGAGTGCGAGGGTACAGACAGAAACATGGAGTCGCATCATCGTCGTCATTCCCAGATCGACTACAGCTGCAAAGTGGGCTGCCAACGGTTCGCTAGCAAGGATTTGTTCCAGAGGCACGCCGAGCAACAGCAGGAACGTTTGAAAGTTTACAAATGTACACAATGCAACAAAACGTTTGGGAACGAACTTACATTGCGCAATCATTTGATAGCTACCAATCATAAAACGTTCGTCCACGGTGAAGAATACGACCCCAATAAACGGATTAAAAGGGTCGCTGCGAGGGCGGCGCAAAAAATCATCGACAAAATTAAGACGGAGGACGGTTTGGAGGATTACGACGAGGAGGAGGATAACGAGGATCGTGGTAAGACCGCGGATGGAAATTGCGCTCGGAATAAGAATAGGCGAGACGTTTCCTCGCAGAGAAAGTACAATTACAAGAAGGAACTGGAATGTGCGAGTTGCAACAAGAGGTGCAGCTCGAAGCAATCTCTGGCAAAGCATATGGAGCATCACGTGAAAGACGAGGAGCAACGGGCGACAAAGTCGGGCAAGCAAAAGCAGATCGTGGAGAAGAGAGAGCGGCAAAGAAACTGTGGTAACGCGGACCTCGACAGTGGGGATAAGAAGGATGACGATTACGATTCCGATTTCGAGAGTGGTTTAGATTGGCCGATGGACAATCACGAGTGCGCAAAGTGTAAGAAGCGATACAGCACGAAAAAGTCGTTGCTGCGGCACCAATTGTTGCACGAGGAGCCAAACTTTGAATGCGACATTTGTAACGTGAAATTTTACCGCAAGGACAAACTGAAAGCTCATTACGATAAATGCTCGGAGAAGAATCCTGATCAAGTGAGGAAGTGCAACATTTGTGGCGACAGTTTCGAAAACAACGAGATTCTGCGCGAACATAGATCGAAACATGTTACCGAAGGTATACTCACGGAGGAGGATTTGAGGGATATCGAGCCGCGGGCCGAGGAGAAGAAACCGGGGGAAAAGATTGGTAGAAAGAGGAGAACCGATATCGTTGGTTTAGAGTGCACGGAATGTAACAAGCAGTACACGTCGAGGAAAGGCCTCCTTCGACATATACAAGTCCACGAGGGGAAAAAGTATTTGTGCGACATATGCCCGAAGAAATTTTACAGGCGCGAGCATTTGAAGATACACGTAGCCAAACACAACATGATTAAACCGTACAAGTGTACGCGTTGTACCAAACGTTTCATCaaagaggatcagctaacgAATCACTTGTCGAAGCACGACCGTACGTTCAAGAAGAACAAAGAGACGGATAGCTCAAAAAGATTTCTTTGCGAGATTTGTTCAAAGAGTTTCACGCAGTCTACCACGTTAATCGCTCATCTTAGAGCGCACAACGGTATAAAGCCGTACGTTTGCGAAGTATGTTCGCGCCCATTTACAACAAATGCTTATTTGAAAATGCATATGAGAACTCACACTCAAGAGCGACCATATATTTGCCAGTACTGTTCGCGAGCGTTCGCTCGAGCCGACACGCTCGCTAATCATTTAACTTCGCATACAGGAGAAGCGAAATACCATTGCAAGTATTGCCCGAAAAATTTCCGCCGCCTCAAGTCCCTTAAGGAACACGTTTTCATTCATACCGGCCAGAGGCCTTACGCCTGTCCAACTTGCGATAGACGGTTCAACAATAACGGGAGTCGATACGCTCACAGTAAACGGTGCAAGCAAAATTTCCTTCAAAATCAGAATCAGAATCAGAATCGAGGTCAAGCGTTATCCACGCAAGTACAGCCGGTTCAAAATCAGCAACGAGTGCTGCAACAGGCCGCTGCTCTTGCTCAAGCTCAAGTGATTAAGgcacaaaatattaaaaccaTTACGATTACCAGGCAAGCAGATGCAGTCGCAGCCGCAGCTCAACAAGCGGTTATGCAACATCAGGAGATACTGATGCCACTGATCCTTCCTCTTACGGTTACGCTTGCCGATGTCGGTGAAGAAGTTATACTGCCGGaaggaacgaaaatatttacaacCTCGTAA
Protein Sequence: MDTVEINTTVSTQNEGQGIVSTVEICRVCLLGNLVMRDLFLESEVASLSAKAMSFANVKMLPGDGLPTHVCCMCADKLESAYDFKLQVEQADTVLRERFVTMHIKEELFFDDVEVHLESGEQNDSIGEMQVENHYQSSAESLTSMSQEEKTSLLKDQLDLLRVDKLDEQEQAMREQNNSAIIEEVIVQAIPMEQTSEGCLNQDEEEEEEEQEEQEEQEQEEDSIGGIAVDLKNDVILKHENENGDCLGSIQTVEHDYILHQGCMLSNEQQQEQQQEEEGQQQQQGQEDEGEEEEEGVVEEEEEEEEEEEEAEAEEEQQQQQLTSVESRERDDCTEYVNLLVKAAVATNQGGEEETEKFNATMVDVKAELQTQFQTESRRSKRKLVRRNLETDRDSDEENYFENLNLSSRLKKTPVFNKSEKIFFLCYLCDEEFLSKNVLKEHMHSHEEVRRALSLKKNVDTPQKSASTVAKSPPSGKRSNKCPYCGKQYIYIISYSKHLKKHEREKEAGKEETMPLEISFHEDEHSLDLDDYKEERHHLDGEFPLRKRGKQKRESEGIAKIGREVMKEEVEDQLENESEERRNGREGVHVDDSEDNLSREEELEVCCSRREMFSCEKCPEKFDRKRGLRKHEISHATLKCNVCEEEFESLEKLRKHRMGHVVEGVLTEQDLEADRDRNGDRDRDRDRDKDMDKESEAAKDESGVKECVGNEEEAAVTVATGGSLECEGTDRNMESHHRRHSQIDYSCKVGCQRFASKDLFQRHAEQQQERLKVYKCTQCNKTFGNELTLRNHLIATNHKTFVHGEEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEDNEDRGKTADGNCARNKNRRDVSSQRKYNYKKELECASCNKRCSSKQSLAKHMEHHVKDEEQRATKSGKQKQIVEKRERQRNCGNADLDSGDKKDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRAEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEDQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQNQNQNRGQALSTQVQPVQNQQRVLQQAAALAQAQVIKAQNIKTITITRQADAVAAAAQQAVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01069818;
90% Identity: iTF_01070517;
80% Identity: -