Nhir006898.1
Basic Information
- Insect
- Nomada hirtipes
- Gene Symbol
- -
- Assembly
- GCA_951802735.1
- Location
- OX637919.1:12797199-12800192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.037 3.8 8.6 0.4 2 23 374 395 374 395 0.98 2 14 0.00088 0.09 13.7 3.2 2 23 437 459 436 459 0.95 3 14 1.4e-05 0.0015 19.3 0.1 2 23 466 487 465 487 0.96 4 14 5.1e-06 0.00052 20.7 2.6 1 23 493 515 493 515 0.96 5 14 0.00015 0.016 16.1 1.9 1 23 524 546 524 546 0.97 6 14 0.00063 0.065 14.1 2.6 1 23 552 574 552 574 0.98 7 14 3.3e-06 0.00034 21.3 0.5 1 23 579 601 579 601 0.97 8 14 3.9e-05 0.004 17.9 1.8 1 23 608 630 608 630 0.98 9 14 0.00066 0.068 14.1 0.3 2 23 664 686 663 686 0.96 10 14 0.025 2.6 9.1 1.9 1 23 692 714 692 714 0.95 11 14 0.0017 0.17 12.8 3.9 1 23 720 742 720 742 0.98 12 14 2.3e-06 0.00024 21.8 0.3 1 23 748 770 748 770 0.98 13 14 3.6e-06 0.00037 21.2 1.4 1 23 776 798 776 798 0.98 14 14 0.0034 0.36 11.8 0.3 2 23 804 825 803 825 0.95
Sequence Information
- Coding Sequence
- ATGAAGATAATTTGTGCagcagaaaattgtaaatactcTTCAACTAATGAGGACTCAACGCACATCATGTTTATCAATTTTCCAAATAGTGATGTGTCGAAGATATGGGCCCATCATTGTGGTAGAACAGACCTCCTAATGAAGTCCAATGAAGAgttgcatttaaattattacataTGTTCTAATCATATAGAGGatcgttattatttaaataaaacaaatcctATCGTAATAGATCAACAGGCTGTCCCAACGTTATTTGAATCGCCTGTCGTTATAGAAAAGAATTCCAGAAACATATTTGGCAAAAATGAACGAACAGAAGTAACTGACAGTGTTGTACTATCGTATTGCGATATCGATGTTGGAATTGATCAGTATCGTGATGTCAGTATTAACTTCCCAAATATATGCAGGATATGCGGAGAAGCATCTTTGAACCATATAGACATATTTGCATTGAAAGGTATAGAATTGAAGTTGAAAGAGAAGATAAATATACATCTCCCGATCAATGTCGATGTAGAAGATTTAATGCCACAGAAATTATGTATGACTTGTTACAATAAACTGGAAATTGCGCATTCGTTAGTCGTGACTTCCATAAAAACAGACATGAGATTGAAGAGATATCTGAACATGAACGATGAGATCAGCTATGACGACAGATACAATGCGATAGCAGAAGAGTGCTCCTTAGAAATAGCAGAAGAAATTTGTGTAAACGAAGGAGCGGAAGTTTCGTCTACAGAGTTATCATCtaacaaaattgaagaaacaCCCACGCATCAAGAAATTACTCAGAAGTCCAGCTGTATGAACAATATGAAGAAACAATTGCAACCTAAGTTAAGCAGTATCATTGAGCACCACAGTGTTGAAAATAAAGGCAATGAAGCTACAAACAAAGTTGTAAAACGTTATCTAAACAATGGAACAACCAATACAGAAACAGAAGTCCAGCGCATGCGTTGCAGAGATACATTTAAAACGCAAGAAATATTCGGGAATCATAAAATAGTGTGTAACGCAGAAGACACAAtggagcaaaaaaaaaatgaaactaaaTCTAAAAAGCCTAATAACTTGAAAGAAATAAACTTTGCATTCATTACAAGAACGTGCGATGTTTGCCAGGAGTATTTTGAAACTGATATACAGTTCGTAGAACATAAGCGTACACATTGTAGACTTGCTCAAGAGGAATATTATCAGGAATTAGATAAATTAAAcacgaacgaagaagaaatgcaaaatatatataagcATTCTTACAATAATACTATTCCACTCATGGAAGTATTTAAGAAATGCGGCCACTGCGATCTAGTCTACACTACAAGAAAGGAATTGCTAAATCATATTATGGAATGTCACGAGAGACAGATTTTACTGAAATGTGCTATATGCGACCGAAGTTTTGCAAGATGGTCCAGTTTGGATGTGCACGAAGCTACCCACAGAATAGATAAGCCTTACCTGTGCGATTTATGCGGAAAAAGCTTTAAACATTCCAACAATCTGAGGGGTCATAAAAGAATTCATTTAGACGAGTCGAAAAAAAAGCGTCACGTTTGTGAAATATGTGGGAACGCTTTCAGATCTAGATTTCATTTGGGGGAGCATATGAACCAGCACAGTGGGAATAAACCTTACTCTTGCGAAAAGTGCGCAAAAACTTTTTACAAAAGAATACAATTGAGGCAACATAAATTGTCCCATGGCCTAAATAAACATGTCTGTCCAGTATGTGGTGCAGCTTTTAATCGTAAGGGAAACATGAATACGCATCTTAAACGCCATAGCAACGAGGATAGTAGATACGCATGTAGTGTCTGCACACAAAGATTTAAATCGATGAGCGATTTAAAGTTACATAGGAAAACGCACACAGAACAAGACATCCTAGATAACGTACAAAAGAGATGTATCGATAAAACTGCGGTGCTAAATCACGAACGCATACATAAAGATGATAAGGCCAACGTTGAATGTAATATCTGCGGGAAAAAATTGGCCAGTAGGAATTCTTTGATATATCATAAAAAATCTATTCATTTTTCCGAGAGGTCCCACATGTGTCAGTTCTGCGGAGAATCATTTGTTTCTAAAGAAGCATGCCTAATACACGAACGAATACATACCGGAGAACGCCCTTATAATTGCAAAGTATGTAAAATGGAATACAAATGTTCTAGCAATCTTAATCAACATATGAAAATCCATTCTGGCATTAAACCGTACGAATGCATGTCTTGTGATAAAAGTTTTACGCGTAAGGGTGCTTTAAATGTACATGAACGAATTCATACCGGGGAAAGACCATATGTGTGTGAAATATGCAATAGAACGTTCTCCCAGAAAAATGACATGATAAAACATTCGAAAACCCACGGCACAAAATCGTTACATTGTGCACAATGCGATGAAGTGTTCGCGAAGAAGAAGGATATCTTGAAACATATTGCTGTGCATGAGCAATACGATCCTATGGTTGAAGAGTACGTACGGATACAGCAACAAGTGCAACCCTACAACGCGGATATACCGTGTCCACAATTTGAATAA
- Protein Sequence
- MKIICAAENCKYSSTNEDSTHIMFINFPNSDVSKIWAHHCGRTDLLMKSNEELHLNYYICSNHIEDRYYLNKTNPIVIDQQAVPTLFESPVVIEKNSRNIFGKNERTEVTDSVVLSYCDIDVGIDQYRDVSINFPNICRICGEASLNHIDIFALKGIELKLKEKINIHLPINVDVEDLMPQKLCMTCYNKLEIAHSLVVTSIKTDMRLKRYLNMNDEISYDDRYNAIAEECSLEIAEEICVNEGAEVSSTELSSNKIEETPTHQEITQKSSCMNNMKKQLQPKLSSIIEHHSVENKGNEATNKVVKRYLNNGTTNTETEVQRMRCRDTFKTQEIFGNHKIVCNAEDTMEQKKNETKSKKPNNLKEINFAFITRTCDVCQEYFETDIQFVEHKRTHCRLAQEEYYQELDKLNTNEEEMQNIYKHSYNNTIPLMEVFKKCGHCDLVYTTRKELLNHIMECHERQILLKCAICDRSFARWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESKKKRHVCEICGNAFRSRFHLGEHMNQHSGNKPYSCEKCAKTFYKRIQLRQHKLSHGLNKHVCPVCGAAFNRKGNMNTHLKRHSNEDSRYACSVCTQRFKSMSDLKLHRKTHTEQDILDNVQKRCIDKTAVLNHERIHKDDKANVECNICGKKLASRNSLIYHKKSIHFSERSHMCQFCGESFVSKEACLIHERIHTGERPYNCKVCKMEYKCSSNLNQHMKIHSGIKPYECMSCDKSFTRKGALNVHERIHTGERPYVCEICNRTFSQKNDMIKHSKTHGTKSLHCAQCDEVFAKKKDILKHIAVHEQYDPMVEEYVRIQQQVQPYNADIPCPQFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01067087;
- 90% Identity
- iTF_01069122;
- 80% Identity
- iTF_01068345;