Basic Information

Insect: Nomada goodeniana
Gene Symbol: ush
Assembly: GCA_963969485.1
Location: OZ018306.1:11553326-11557936[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0055 0.4 11.2 0.0 3 20 265 282 263 284 0.92

2 8 4e-05 0.0029 17.9 1.3 1 23 314 336 314 336 0.98

3 8 0.092 6.7 7.3 1.6 3 20 375 392 374 394 0.93

4 8 0.014 1 9.9 4.4 2 21 610 629 609 630 0.94

5 8 0.064 4.7 7.8 0.0 3 20 658 675 656 677 0.91

6 8 0.016 1.1 9.7 0.0 2 23 716 737 715 737 0.95

7 8 0.02 1.5 9.4 1.5 1 23 743 765 743 765 0.98

8 8 0.09 6.6 7.3 0.5 3 21 861 879 860 880 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0055	0.4	11.2	0.0	3	20	265	282	263	284	0.92
2	8	4e-05	0.0029	17.9	1.3	1	23	314	336	314	336	0.98
3	8	0.092	6.7	7.3	1.6	3	20	375	392	374	394	0.93
4	8	0.014	1	9.9	4.4	2	21	610	629	609	630	0.94
5	8	0.064	4.7	7.8	0.0	3	20	658	675	656	677	0.91
6	8	0.016	1.1	9.7	0.0	2	23	716	737	715	737	0.95
7	8	0.02	1.5	9.4	1.5	1	23	743	765	743	765	0.98
8	8	0.09	6.6	7.3	0.5	3	21	861	879	860	880	0.92

Sequence Information

Coding Sequence: ATGTTCCACGATAATGCAGCGGAGGATTTTTCGAAAATCCTAAATCCCTCAGGGGAGGATGAGGAATGGAGCGACTCGGAGAAGACACCGTCGGTGAGCAGCGGCGTCGAGGGCGGTGGATCGGCGGTGTCCAGCCCGATCGCCCCGGTCGCCGACGAGGAATCGAGCCTGCCACCACCGCCGAGACTGAATCCGCCGTCCTCGTCGACCGCGATCGTCAATTCGGCCGCCGAGGATATCAGATTGAGGCTGAGCGTGCTCTCCGAGGACGCTAGGAAACGGCTGGCCAGCCTTACGGAAGATATCGAGGTCGCAAAGAGTTTGAGGGACCGACATGCCGCCTCGAGGTCCAATCAGACCCGAGAGTCCAGTCCGAAGGACACGGACGAGGAGGCCAGCATGGTCGTGGTGAAAGAGGAGGACTGTCTACCCAGGTCGTCGTCCTCTTCGACATCCTCGACCAGAAGACGAGAATCCGCGTGCAGGAGGGACTCGGAGGATTCCTCGAGGCGCCCGAACACCGACGAGCCCTCGTCCGAGAAGAAGCTGAAACTCGACGACGAAGCCGCACCAAGACTGAGACTCAATGCCAGCCTGGCGACGGACCCTGCGCTACGACCCGCAGCCGTAGCCGCGCTCACTGTCAAACCCGAAAATACCTCGCCGTCAAACCCTGTGCCACCACTGCCGGCTGGTCTTCAAAATGCAATAGCGTCGGGACGGCTGTTCGTGCTTCCGACCGACGGCAAAGAAACGATCACCGTGGAACCAGCGAGGCCGACCCCGTTGATCTGTCCGCCGTGCGGCATCCGCTTCAGCTCGGCCAGCACCCTCGAGGCCCATCGCACCTTCTACTGTGCCCATCGTCCCCGGCTCGAGGAGGACACCacgaacgacgaggacgaggagaaGTCGAGCAAGTTCGAGGTGAGGAAGGCGTACGCCTGTCCCCACTGCTCGTACAGCGCGGACAAGAAGGTCTCGCTGAACAGACACATGAGGATGCACGCTGCGTCGCCGGCGCCACCCACGATACCAACGGCGCCGACCGCGGCCATCACGCCGGGAAGCGGCGCGGCGACTGCCTCCAACGGTTCCCTGAACGAGGAGGCGGAGAGATACTGTCGAAACTGCGACATTCGATTCAGCTCTCTGAAAACGTACAGAGCGCACAAGACTCACTACTGCAGCACCAGGCACGTGGTCAAGGATACACCGACCACGGCCGCGGTGGCGTCCTCGTCGGTGAAAGCGTCTCCGCCGACCAGCGCGAGCCCCGGAGATTCGCCACCCCCGCAGCCTTGCCTGGCGCTACCGACCAATCCCATCCTCATCGTGCCGTACTCGTTGTTCCGGGGTGCCAGCGTCCTGGCGGCGCCGACTTTGCCCGCGCCCGACACCGCGTGCTTCCTTCTTCCGAACGGTCATCTTCAGCCAATGACCAGAGGCCTGGCAGCAACGGCGCAGAATAGCGCGGTCGAATCACCGCCGGTTCTTCGTGCAGCGAACAAACCAACGACGCCAGCGTCCATTGTGGCATCGTCCACGTCGCCGTCCGGCTCGGCGCCCCTAGATCTGAGCGTCAGGAAGTCACCTGCGCACCAAGACGAGAAGGAGAACAGGGTATCGCCGGCGCCCTCTTCCCTACCGCCACCTCCGGGTAGTCCGAGGTCCAGAGGGAGCGGAAGTCCCAGAGCGAGATCTATCGGCTCTACCCCGGCGGCAGCTGGAAATGCTGCGCCACCTCCGCCGACGGAATTAGCTCTGAGACTGGCTGAACTTCCACCGCCACCTGTCCCTGGAGTCCTCGTTAAGCAGGGTGTCTCGAGATGCAAGGAATGCAACATCGTGTTCTGTCGACACGAAAACTTCGTCGCGCACAAGAAACATTATTGCCAGGCGAGGGAGACGACTGTGAGCAATAGTCCACCGCCTCCTGGTACACCGTCACCTCCTCTGGTCCAATTGATCTGTGCCGCGTGTGGCATTAAATTCGCCTCCATGGATAATCTCGTAGCTCATCAAGCGTTCTATTGTCCCAAAAGGCCGGATCCCCAGGAACATCACTCGAGATGCTCCAAGTGCAAGGCTATAATCGAACCTGGAGGCACCCACACCTGCACCAGCGGAACAACCGGAGGCTGGAGATGTCCCGTTTGCGGTGCGGTTAGCCCGACGGCTGGGGCAGCTCAGCGTCACATGGACGCGCACCAGGGTGTGAAAGCTTTCAGGTGCACCATTTGTCGTTACAAAGGAAACACGTTGCGCGGCATGAGAACGCACATCAAGATGCATTTCGAGAAACGTGGAACCGATCTGCAGgaagaaaattatataacgTGCGTTCTCGACGACGAAACGGTTCTACCTACTCCGGAACCTGCTCCCGCGACCACGCCAGAGGAAATTCCCGGAGAGGTGCAGGTGAACGGGAAAGCCGAGGTTCGGAAAAGTCCAcaaccaccgccgccgccgccgccacctccGCCAGCACCGGTGACCAACAAGGTGAAACAGGAACGCGAAGATACTCCACCGCCTGAAGAAAGCTTGGACCCAAACAAGAGCGGGCCCCGTTACTGTAGGTCGTGCGATATCAGCTTCAATTACCTGAGCACGTTCATTGCTCACAAGAAATTCTATTGCTCGAGCCACGCCGGGGAGGCgagcaataacaataataataataacaataataattcgagCAACCACGCGACGACGCCTCCGAGCGGCCGGACAGAGGCGTCTGTGCTTTAA
Protein Sequence: MFHDNAAEDFSKILNPSGEDEEWSDSEKTPSVSSGVEGGGSAVSSPIAPVADEESSLPPPPRLNPPSSSTAIVNSAAEDIRLRLSVLSEDARKRLASLTEDIEVAKSLRDRHAASRSNQTRESSPKDTDEEASMVVVKEEDCLPRSSSSSTSSTRRRESACRRDSEDSSRRPNTDEPSSEKKLKLDDEAAPRLRLNASLATDPALRPAAVAALTVKPENTSPSNPVPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPTPLICPPCGIRFSSASTLEAHRTFYCAHRPRLEEDTTNDEDEEKSSKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPTAPTAAITPGSGAATASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPTTAAVASSSVKASPPTSASPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGHLQPMTRGLAATAQNSAVESPPVLRAANKPTTPASIVASSTSPSGSAPLDLSVRKSPAHQDEKENRVSPAPSSLPPPPGSPRSRGSGSPRARSIGSTPAAAGNAAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPDPQEHHSRCSKCKAIIEPGGTHTCTSGTTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIKMHFEKRGTDLQEENYITCVLDDETVLPTPEPAPATTPEEIPGEVQVNGKAEVRKSPQPPPPPPPPPPAPVTNKVKQEREDTPPPEESLDPNKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNSSNHATTPPSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00676278;
90% Identity: iTF_00964084;
80% Identity: -