Ngoo004592.1
Basic Information
- Insect
- Nomada goodeniana
- Gene Symbol
- ZNF639
- Assembly
- GCA_963969485.1
- Location
- OZ018301.1:9544309-9547268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.2 14 6.2 0.2 2 23 371 392 371 392 0.97 2 14 0.00036 0.026 14.9 3.7 2 23 434 456 433 456 0.95 3 14 2.7e-05 0.0019 18.4 0.1 2 23 463 484 462 484 0.96 4 14 5e-06 0.00037 20.7 2.6 1 23 490 512 490 512 0.96 5 14 0.00026 0.019 15.3 1.9 1 23 521 543 521 543 0.97 6 14 0.00062 0.046 14.1 2.6 1 23 549 571 549 571 0.98 7 14 3.3e-06 0.00024 21.3 0.5 1 23 576 598 576 598 0.97 8 14 0.00049 0.036 14.4 2.0 1 23 605 627 605 627 0.99 9 14 0.00042 0.031 14.7 0.2 2 23 661 683 660 683 0.96 10 14 0.025 1.8 9.1 1.9 1 23 689 711 689 711 0.95 11 14 0.0016 0.12 12.8 3.9 1 23 717 739 717 739 0.98 12 14 5.7e-05 0.0042 17.4 0.6 1 23 745 767 745 767 0.95 13 14 7.4e-06 0.00054 20.2 1.2 1 23 773 795 773 795 0.98 14 14 0.00057 0.042 14.2 0.3 2 23 801 822 800 822 0.96
Sequence Information
- Coding Sequence
- ATGAAGATAATTTGTGCAGCAGAAAACTGTAAATACTCTTCAAATAATGAGGACTCAAGGCACAtcatgtttattaattttccaaacaGTGATGTGTCAAAAATATGGGCCCATCATTGTGGCAGAACAGACCTCCTGATGAAGTCCAATGAAGAgttgcatttaaattattatatatgttcTAGTCATATAGAGGatcgttattatttaaataaaacaaatccTATCGTAATAGATCAACAGGCAGTCCCAACGCTATTTGAATCGCCTGTCGTTGTAGAAAAGAATTCAAGAAACATATTTAGCAAGAATGAGCGAACAGAACTACCTGACAATGTTGTACTATCGTATTGCGATATAGATGTTGGAGTTGATCAGTATCGTGATGTCAGTATTAACTTCTCAAATATATGTAGGATATGTGGAGAAGCATCATTGAACGATATAGacatatttgcatttaaaggGATAGAATTGAAGTTGAAAgagaagataaatatatatctccCGATCAATGTCGATGTACAAGATTTAATGCCACAGAAGTTATGCATGACTTGTTACAATAAACTAGAAATTACACATTCATTAGTTGTGACTTCCATAAAAACAGACATGAGATTGAAGAGATATCTGAACATGACTGACGAGATCAGCTATGACGACAGATACATTGCGATAGCAAAAGAGTGCACCCTAGAAATAGCAGAAGAAACTTGCGTAAACGAAGCAGCGGAAGATGCATCTATAGAGTTAACATCtaacaaaattgaagaaataattactCACAAGTCCAGCTGTAATGTAGCGAGCAATATGAAAAAACAATTGCAACCTAAGTTAAGCAGTATCATTGAATCCAACAGTGTTGAATCTAAGGGCAATGAAACTACAAACAAAGTTATAAAACGTTATCCAAACACTGGAATAACCAAGACAGAAACAGAAATCCAGCGCATACATTGCAAAGATACATTTAAAACGCAAGAAATATTTGGAACTCATAAAATAGAATGTAACGCGGAGGACACAatcgaacaaaaaagaaatgaaactaATTCTAATAAGCCTAATAacttaaaagaaataaacttTGCATTCATTACAAGAACATGCGACGTTTGTCAGGAATATTTTGACACTGATATACTATTTGTTGAACATAAGCGTATACATTGCAAACTTGTTCCAGAGGAACATTATCAGGAATTAGATAAACTAAGCatgaacgaagaagaagctcaaaatatatataagcaTTCTTACAATAATACTATACCATTAATGGAAGTATTTAAGAAATGTGGCCACTGCGATCAGGTCTATACTACAAAAAAGGAATTGCTAAATCATATTATGGAATGTCACGAGAGACAAATTTTACTGAAATGTGTTATATGCGACAGAAGCTTTGAAAGATGGTCTAGTTTGGATGTACATGAAGCTACCCACAGAATAGATAAGCCATACCTGTGCGATTTATGCGGAAAAAGCTTTAAACATTCCAACAATCTGAGGGGCCACAAAAGAATTCATTTAGATGAGTCAAAAAAAAAGCGTCACGTTTGTGAAGTATGTGGGAACGCTTTCAGATCTAGATTTCATTTGGGGGAACATATGAACCAGCACAGTGGGAATAAACCTTACTCTTGCGAAAAGTGCGCAAAAACTTTCTATAAAAGAATACAATTGAGGCAGCATAAATTGTCTCATGGTCTAAATAAACATGTCTGTCCAGTTTGTGGTGCAGCTTTTAATCGTAAGGGAAACATGAATACGCATCTTAAACGCCATAACAATGAGGATAGTAGATACACATGTAGTGTCTGCACACAAAGATTGAAATCAATGAGCGATTTAAAGTTACATAGGAAAACGCACACAAAACAAGACATCCTAGATAACGTACAAAAGAGATTTACCGATAAAACTGCAGTGCTAAATCACGAACGCATATATAACGATGAAAGGGCCAACGTTGAATGCGATATTTGCGGGAAAAAATTAGCCAGTAGGAATTCTTTGATATATCATAAAAGATCTGTTCATTCTTCCGAGAGGGCCCATATGTGTCAGTTCTGCGGAGAATCATTTGTTTCTAAAGAAGCATGCCTAATACACGAACGAATACATACTGGAGAACGCCCTTACAATTGCAAAGTATGTAAAATGGAATACAAATGTTCTAGCAATCTCAATCAACATATGAAAATCCATTCTGGCGTTAAACCGTACAAATGCATATCTTGTGACAAAAGTTTTACGCGTAAGGGTGCTTTAAATGTACATGAACGACTTCATACCGGGGAGAGACCGTATGCGTGTGAAATATGCAATAGAACCTTCTCCCAGAAAAATGACATGATTAAACATTCTAAAACGCACGACACAAAATCGTTACATTGTGAACAATGTGGTGAAGTGTTCGCGAAGAAGAAGGATATTTTGAAACATATTGCTGTGCATCAACAATACGATCCTATGGTTGAAGAGTACGTACGAATACAGCAACAAGTGCAACCCTACAACGTGGATATACAGTGTCCACAATTCGAATAA
- Protein Sequence
- MKIICAAENCKYSSNNEDSRHIMFINFPNSDVSKIWAHHCGRTDLLMKSNEELHLNYYICSSHIEDRYYLNKTNPIVIDQQAVPTLFESPVVVEKNSRNIFSKNERTELPDNVVLSYCDIDVGVDQYRDVSINFSNICRICGEASLNDIDIFAFKGIELKLKEKINIYLPINVDVQDLMPQKLCMTCYNKLEITHSLVVTSIKTDMRLKRYLNMTDEISYDDRYIAIAKECTLEIAEETCVNEAAEDASIELTSNKIEEIITHKSSCNVASNMKKQLQPKLSSIIESNSVESKGNETTNKVIKRYPNTGITKTETEIQRIHCKDTFKTQEIFGTHKIECNAEDTIEQKRNETNSNKPNNLKEINFAFITRTCDVCQEYFDTDILFVEHKRIHCKLVPEEHYQELDKLSMNEEEAQNIYKHSYNNTIPLMEVFKKCGHCDQVYTTKKELLNHIMECHERQILLKCVICDRSFERWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESKKKRHVCEVCGNAFRSRFHLGEHMNQHSGNKPYSCEKCAKTFYKRIQLRQHKLSHGLNKHVCPVCGAAFNRKGNMNTHLKRHNNEDSRYTCSVCTQRLKSMSDLKLHRKTHTKQDILDNVQKRFTDKTAVLNHERIYNDERANVECDICGKKLASRNSLIYHKRSVHSSERAHMCQFCGESFVSKEACLIHERIHTGERPYNCKVCKMEYKCSSNLNQHMKIHSGVKPYKCISCDKSFTRKGALNVHERLHTGERPYACEICNRTFSQKNDMIKHSKTHDTKSLHCEQCGEVFAKKKDILKHIAVHQQYDPMVEEYVRIQQQVQPYNVDIQCPQFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01067087;
- 90% Identity
- iTF_01069122;
- 80% Identity
- iTF_01067660;