Nfer006705.1
Basic Information
- Insect
- Nomada ferruginata
- Gene Symbol
- -
- Assembly
- GCA_963583965.1
- Location
- OY757217.1:8193596-8196423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 2.5e+02 2.9 0.0 1 19 359 377 359 379 0.82 2 12 1.2 1.3e+02 3.8 1.5 1 20 382 401 382 403 0.88 3 12 3.3e-06 0.00036 21.3 4.2 2 23 449 470 448 470 0.97 4 12 4.8e-05 0.0053 17.6 0.5 1 23 476 498 476 498 0.98 5 12 3.1e-06 0.00034 21.4 0.9 1 23 504 526 504 526 0.98 6 12 0.00018 0.02 15.8 3.6 1 23 532 554 532 554 0.98 7 12 0.00016 0.018 15.9 1.0 1 23 560 582 560 582 0.98 8 12 5.3e-06 0.00058 20.6 0.4 1 23 590 612 590 612 0.98 9 12 0.0049 0.54 11.3 0.2 1 23 618 640 618 640 0.94 10 12 2.8e-05 0.0031 18.3 1.9 1 23 646 668 646 668 0.98 11 12 8.6e-05 0.0095 16.8 0.6 1 23 674 696 674 696 0.97 12 12 0.024 2.6 9.1 5.3 1 23 702 724 702 725 0.95
Sequence Information
- Coding Sequence
- ATGGCCGTCGTCGAGGAGTTCGATTATTTATGCCGCCTTTGCGCGACTAAAACGGGTTTATTAATGGGATTGCCGATCTTCGAGGCCGGCGATCAGATGCGCAATATTGATAAGAAAATAGCCTCGTGTTTGCCAGTGCAGGTATCTATGACGGATCAATTGCCGAAAGTGGTCTGCGAAGAGTGCGCTTATAAATTGGACCAGCTGTTTGACTTTCGTGAAAAGTGTTTACACACAGAGAGGATGTTCATGGAAATGTTGAAAGAGATCGCTAAAGACGAGATTGTGCATATATCGAAGCGGGACTTGGAGGACGTAGAAGAAATGAATAGGATTCAGAGGAATATTAATAGAATACAGAGTGACAtggaaaatgtacaaaatcATGTAACTCCCCAAGAGGCGGGGGAAACAACGATTCATACCATGCAAGTTATGGACGACATAGATTTGTCTGGTGGCGAGCAAGTTGTTACGCAAGAAGAGATGGGCCAACGGGACACAGATATCGAGGTTGCCGGTATTGATTGCTTAGACGGAGACACGGTCAGAATGGTGGACGAACATATACGAGAAGTGTCTGATCATCAAATAGCGATGCATCTGGAGGGTGATATGGCTGTAGTTGGGAATTTAACAGTGAGCAGTCACTTAAGTCAGTTAGGAATTAATTATGTAACTTCGATGAACACAGTCCCGGATGATCAAAACCAGGAACCAATAGTACATTATTGTGACAATGTAAAGTACGAGTCGGTACCTATAAAGCAAGAGTACCGGAGGTTACAGGAGAGATTAACCACGGAAGTCCCCGCGAATGTACTTGAAAATAATGTACCACACGAGAGTTATCCCTCTACTCATCCAGAAACTGGAAGTGATATAGAGGAATCAAGAGTAGTCGAAAACGATACCCCTACGCACACGAATCCTGAAACGAACACAGTAGCATCTACGAGCCAAGTGGCGACGGGTAATTCGGAAATTTTAGTTGAATATACGAAAAGAGCCAAGCACGCGTTATTAGAAACAACGCTAAACAATCCCACAATCGACGAAACAGGATCGAATTGGTACGTGTGTCCATTTTGTAACGAGGCGACGTTGGGTTCGAGTAACATGATAGCACATTTCGAGCAATACTTTTGTTGCTGTCCCTGTGGCCTCTATTTTACAAATGTAGATGCACTAACTGTTCATAAGGAAAGCTGTGATGTACATAAAAGTAAAACGAACagcaaagaagaagaagaaggtcTGGAGTCGGAATTAGTTGGGTCTGAAAGCGAGGCAAATTTGGACGACAAGAAAGAAACATCAATGAAGCAAAAATGGATACCAAAAGTTTGTACCCATTGCGGAAAACAATACAGAACGAATTACAAGCTGCAAGAGCATATGCGGAAGCACACTGGCGAAAAGCCTTTTCAATGCGTGACTTGTGAGAAAACGTTTCGTAGCAAAATAGGACTGGCACAGCACACTGCCACGCACACAGGGCAATTCGATTACAATTGCTCCACGTGCGGTAAAGGTTTCCAATCCAAGAGCTATCTTGTCCTACACCAAAGAGTGCATTCGGATATAAGGCCGTTCCCATGCAATACATGCGAGCAACACTTCAAAACGAAACAATCGTTGCTGGATCATCAAAACAGGCATCTAGGCGTTAAACCGTATGTCTGCGAAATATGCGGCAGAGGGTTCATAACTAAAGGACTCTGTAAAAGTCATCAGAAAATACATTCGGGCATGGATAATCGTCAATATCCATGCGTGGTATGCAACAAGTTGTTTGTTAGTAAAAGTTATCTCAACACGCATTTGCGCATTCACACTGGTGAAAAGCCGTATCTGTGCGAGGTTTGCGGCAAGGGATTTCTGACGCGCGTCGATCTGAAAATTCATTCGACAATGCACACCGGGGAAAAAAGCTTTAAATGTGATATGTGCGGGAAAGTATTCGCCAGAAGGGCAGCTCTAAGGTGTCACAGAAGGTTGCACACTGGTGAACGGCCTTACAGATGTGACGTATGCGGTAAAACATTTACACAGTTCACCCCCATGGCCATTCACAAAAGATTACATACCGGCGAACGGCCGTACGAGTGCGACGCTTGCGGCAAGACATTCGTGTCGAGATCGACGATGATGTGTCATAAGAAAAAGCATCATAGTACGCAACCTGTGCAAAAAGAAGAGCCAGTTCCTCGTCAGAATgagataaagaatattttACCAGCGGAGATTGTGCTCCGCGATTCCCAAGAGGGAATACAAATTACAGCAGATTGA
- Protein Sequence
- MAVVEEFDYLCRLCATKTGLLMGLPIFEAGDQMRNIDKKIASCLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTERMFMEMLKEIAKDEIVHISKRDLEDVEEMNRIQRNINRIQSDMENVQNHVTPQEAGETTIHTMQVMDDIDLSGGEQVVTQEEMGQRDTDIEVAGIDCLDGDTVRMVDEHIREVSDHQIAMHLEGDMAVVGNLTVSSHLSQLGINYVTSMNTVPDDQNQEPIVHYCDNVKYESVPIKQEYRRLQERLTTEVPANVLENNVPHESYPSTHPETGSDIEESRVVENDTPTHTNPETNTVASTSQVATGNSEILVEYTKRAKHALLETTLNNPTIDETGSNWYVCPFCNEATLGSSNMIAHFEQYFCCCPCGLYFTNVDALTVHKESCDVHKSKTNSKEEEEGLESELVGSESEANLDDKKETSMKQKWIPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKTFRSKIGLAQHTATHTGQFDYNCSTCGKGFQSKSYLVLHQRVHSDIRPFPCNTCEQHFKTKQSLLDHQNRHLGVKPYVCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKLFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACGKTFVSRSTMMCHKKKHHSTQPVQKEEPVPRQNEIKNILPAEIVLRDSQEGIQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761134;
- 90% Identity
- iTF_01067785; iTF_01067111; iTF_01065742; iTF_01070545; iTF_01068467; iTF_01069845; iTF_01069146;
- 80% Identity
- -