Basic Information

Insect: Nomada fabriciana
Gene Symbol: -
Assembly: GCA_907165295.1
Location: OU015689.1:19114339-19117168[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.1 2e+02 2.9 0.0 1 19 359 377 359 379 0.82

2 12 1 1e+02 3.8 1.5 1 20 382 401 382 403 0.88

3 12 3e-06 0.00028 21.3 4.2 2 23 450 471 449 471 0.97

4 12 4.3e-05 0.0042 17.6 0.5 1 23 477 499 477 499 0.98

5 12 2.8e-06 0.00027 21.3 0.9 1 23 505 527 505 527 0.98

6 12 0.00016 0.016 15.8 3.6 1 23 533 555 533 555 0.98

7 12 0.00015 0.014 15.9 1.0 1 23 561 583 561 583 0.98

8 12 4.8e-06 0.00046 20.6 0.4 1 23 591 613 591 613 0.98

9 12 0.0044 0.43 11.3 0.2 1 23 619 641 619 641 0.94

10 12 2.5e-05 0.0024 18.3 1.9 1 23 647 669 647 669 0.98

11 12 7.8e-05 0.0075 16.8 0.6 1 23 675 697 675 697 0.97

12 12 0.022 2.1 9.1 5.3 1 23 703 725 703 726 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.1	2e+02	2.9	0.0	1	19	359	377	359	379	0.82
2	12	1	1e+02	3.8	1.5	1	20	382	401	382	403	0.88
3	12	3e-06	0.00028	21.3	4.2	2	23	450	471	449	471	0.97
4	12	4.3e-05	0.0042	17.6	0.5	1	23	477	499	477	499	0.98
5	12	2.8e-06	0.00027	21.3	0.9	1	23	505	527	505	527	0.98
6	12	0.00016	0.016	15.8	3.6	1	23	533	555	533	555	0.98
7	12	0.00015	0.014	15.9	1.0	1	23	561	583	561	583	0.98
8	12	4.8e-06	0.00046	20.6	0.4	1	23	591	613	591	613	0.98
9	12	0.0044	0.43	11.3	0.2	1	23	619	641	619	641	0.94
10	12	2.5e-05	0.0024	18.3	1.9	1	23	647	669	647	669	0.98
11	12	7.8e-05	0.0075	16.8	0.6	1	23	675	697	675	697	0.97
12	12	0.022	2.1	9.1	5.3	1	23	703	725	703	726	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAATTCGATTATTTATGCCGCCTTTGCGCGACTAAAACGGGTATATTAATGGGATTGCCGATCTTCGGAGCCGGCGATCAGATGCGCAATATTGATAAGAAAATAGCTTCGTGTTTGCCAGTGCAGGTATCTATGACAGATCAATTACCAAAAGTGGTTTGCGAAGAGTGCGCTTATAAATTGGATCAGCTGTTTGACTTTCGTGAAAAGTGTTTGCATACAGAGAGGATGTTCATGGAAATGTTGAAGGAGATCGCTAAAGACGAGATTGTTCATATATCGAAACGGGACTTGGAGGATGTACAAGAAATGAATAGGATTCAGAGGAACATTAATAGAATACAAAGTGACATGGAAAATGTACAAAATCATGTAACTCCCCAAGAGGCGGCAGAAACCACGATTCATACCATGCAAGTTATGGACGATATAGATTTGTCTGGTGGCGAGCAAGTTGTTACACAAGAAGGGATGGGCCAACGGGATACAGATATCGAGGTTGCCGGTATTGATTGCTTAGACGGAGATACAGTCAGAATGGTGGACGAACATATACAAGAAGTGTCTGATCATCAAATAGCAATGCATCTGGAGGGTGATATGGCTGTAGTAGGAAATTTAACCGTGGGCAGTCACTTAAGTCAGTTAGGAATCAATTATGTAACTTCGATGAACACAGTTCCGGATGATCAAAATCAAGAACCAATAGTACATTATTGTGACAATGTAAAGTATGAGTCGGTACCGATAAAGCAAGAGTATCGAAGGTTACAGGAGAGATTAACTACAGAAGTCCCTGCGAATGTACTTGAAAACAATGTACCACACGAGAGTTATCCCTCTGCTCATCCAGAAACTGGAAGTGATATAGAGGAATCAAGAGTAGTCGAAAACGATACCCCTAGGCATACAAATCCTGAAACGAACACAGTAGCATCTACGAGCCAAGCGGCGACGGGTAATTCGGAAATTTTAGTAGAATATACGAAAAGGGCCAAGCACGCGTTATTAGAAACAACGCTAAGCAATCCTACAATCGACGAAACAGGATCGAATTGGTACGTGTGTCCATTTTGTAACGAGGCGACGTTGGGTTCGAGTAATATGATAGCACATTTCGAGCAATACTTTTGTTGCTGTCCCTGTGGTCTCTATTTTACAAATGTGGATGCACTAACTGTTCATAAGGAAAGCTGTGATGTACATAAAAGTAAAACGAACAACAAAGAAGAAGAAGAAGAAGGCCTGGAGTCGGAATTAGTTGGGTCTGAAACAGAGGCAAATTTGGACGACCAAAAAGAAACATCAATGAAGCAAAAATGGATACCGAAAGTTTGTACTCATTGCGGAAAACAATACAGAACGAATTACAAGCTGCAAGAGCATATGCGGAAGCATACTGGCGAAAAGCCTTTTCAATGTGTGACTTGTGAGAAAACGTTTCGTAGCAAAATAGGACTGGCACAGCACACAGCCACGCACACAGGACAATTCGATTACAATTGCTCCACGTGCGGTAAAGGTTTTCAATCCAAAAGCTATCTTGTCCTACACCAAAGAGTGCATTCGGATATAAGGCCGTTCCCATGCAATACATGCGAGCAACACTTCAAAACGAAACAATCGTTGCTGGATCATCAAAACAGGCATCTAGGCGTTAAACCGTATGTTTGCGAAATATGCGGTAGAGGATTCATAACTAAAGGACTCTGTAAAAGTCATCAGAAAATACATTCGGGCATGGATAATCGTCAATATCCATGCGTGGTATGCAACAAGTTGTTTGTTAGTAAAAGTTATCTCAACACACATTTACGCATTCACACTGGTGAAAAGCCGTATCTGTGCGAAGTTTGCGGCAAGGGATTTCTAACGCGTGTCGATCTGAAAATTCATTCGACAATGCACACCGGAGAAAAAAGCTTTAAATGTGATATGTGCGGGAAAGTATTCGCCAGAAGGGCAGCTCTAAGGTGTCACAGAAGGTTGCACACTGGTGAACGGCCTTACAGATGTGACGTATGCGGTAAAACATTTACACAGTTCACCCCTATGGCCATTCACAAAAGATTACATACTGGAGAACGACCGTACGAATGCGACGCTTGCGGCAAGACATTCGTGTCGAGATCGACGATGATGTGTCATAAGAAAAAGCATCATAGTACGCAACCTGTGCAAAAAGAAGAACCAGTTCCTCGTCAGACTGAGATAAAAAATATTTTACCAGCGGAGATTGTGCTCCGCGATTCCCAAGAGGGAATACAAATTACAGCAGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFGAGDQMRNIDKKIASCLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTERMFMEMLKEIAKDEIVHISKRDLEDVQEMNRIQRNINRIQSDMENVQNHVTPQEAAETTIHTMQVMDDIDLSGGEQVVTQEGMGQRDTDIEVAGIDCLDGDTVRMVDEHIQEVSDHQIAMHLEGDMAVVGNLTVGSHLSQLGINYVTSMNTVPDDQNQEPIVHYCDNVKYESVPIKQEYRRLQERLTTEVPANVLENNVPHESYPSAHPETGSDIEESRVVENDTPRHTNPETNTVASTSQAATGNSEILVEYTKRAKHALLETTLSNPTIDETGSNWYVCPFCNEATLGSSNMIAHFEQYFCCCPCGLYFTNVDALTVHKESCDVHKSKTNNKEEEEEGLESELVGSETEANLDDQKETSMKQKWIPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKTFRSKIGLAQHTATHTGQFDYNCSTCGKGFQSKSYLVLHQRVHSDIRPFPCNTCEQHFKTKQSLLDHQNRHLGVKPYVCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKLFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACGKTFVSRSTMMCHKKKHHSTQPVQKEEPVPRQTEIKNILPAEIVLRDSQEGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761134;
90% Identity: iTF_01066436;
80% Identity: -