Nfer006722.1
Basic Information
- Insect
- Nomada ferruginata
- Gene Symbol
- -
- Assembly
- GCA_963583965.1
- Location
- OY757217.1:8260672-8264494[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 12 7.1 0.0 2 20 43 61 42 63 0.93 2 19 2.9e-05 0.0032 18.3 0.7 1 21 80 100 80 101 0.96 3 19 6.8e-05 0.0075 17.1 2.1 2 23 137 158 136 158 0.94 4 19 0.00018 0.02 15.8 2.2 1 23 162 184 162 184 0.97 5 19 0.00017 0.018 15.9 0.6 3 23 192 212 191 212 0.97 6 19 1.7e-05 0.0018 19.0 3.4 2 23 219 240 218 240 0.96 7 19 0.11 13 7.0 2.6 1 19 249 271 249 273 0.73 8 19 0.16 18 6.5 0.2 3 23 279 298 278 298 0.95 9 19 0.57 63 4.8 2.5 3 13 306 316 305 318 0.89 10 19 0.015 1.6 9.8 2.8 1 23 442 464 442 464 0.98 11 19 4.6e-05 0.0051 17.6 0.4 2 23 474 496 474 496 0.95 12 19 0.00014 0.015 16.1 4.9 1 23 502 524 502 524 0.98 13 19 0.034 3.8 8.6 0.4 1 23 528 550 528 550 0.97 14 19 1e-05 0.0011 19.7 1.7 3 23 558 578 556 578 0.97 15 19 1.7e-05 0.0018 19.0 0.8 1 23 584 606 584 606 0.98 16 19 0.077 8.5 7.5 0.9 1 23 612 634 612 634 0.97 17 19 3.7e-07 4.1e-05 24.2 0.1 2 23 641 662 640 662 0.97 18 19 8.1e-07 8.9e-05 23.2 0.8 1 23 668 690 668 690 0.98 19 19 1.2e-07 1.3e-05 25.8 1.9 1 23 696 718 696 718 0.99
Sequence Information
- Coding Sequence
- ATGACGATACCATCCAGGTCCAATCGATCTCGTACCGTTAAATCGCCGAAAGAGGAGGCTCGTTCCTTTGTCCTTGTTGCGGACGATATCGATAACGCGCGGGTCGCTCGAGAAACGACGCCGCAACGATGCGGGTCCTGTGACGAGGAGTTCGTCACGGAGGCTGCTCTGTTGGTCCATAGAACCGAGCAGTCGATCCTGCGTACTCGGGAGTCGTTAAGGAAAGCGGCGAAAAAGTACACGTGCGACGTGTGCCGCGAGAGTTTCGCGAGGAAAATGCAACTGTTCAGGCACAGGCGGCTTCGATGCAACGACTCGACAACGATTGAATCTGGCAAGCAACCAAAAACGAAAGAGAAAGCGACGAgatcgaaaagaaaagagcaGAACGTTTCCACGGGCCCGATCGAGTGCAACGTTTGCCACAAGGTTttcaagaagaagaagtatTTAAATGTTCACAAAGCGTTGCACGGCTCGCCCCACATTTGCCATGTGTGCGGCGCCAAATTGACTTCCGAGTATTATCTGAAGATACATATCAGGAGGCACAACAAAGAGTTCACGGAGTTCTGCGAGGTTTGCAATAAGGGGTTCTACTTGAAGGCGACGCTGAAAACCCATATGAGCGTACACAGCGCGGAAAAGCCTTGCGCTTGCGAGATTTGCCATAAGTCGTTCGGCAATCGAGTTTATCTGAGGAGCCACATGAAGATACACAGCCAGCCGGAGAGCAGGAAGAAGTACAGATGCGACATTTGCGGGTTCGAAACGTTTTATAGTTATTGCTACAAGGAACACTTGTGGACACACACGGGGGAAAGTCGGGTGGCTTGCGAGGTCTGCGGAAAGCTGATACGAAGGCAGTACATGAAGATTCATATTAGGATACACACCGGAGAGAAACCGGAGATCTGTGAGTTCTGTGGGAAAGCATTTAGCTCGAGGAAGTGCCAGGTGATCAGCATCGAGCAAACGAAAATAGAATCGATAGAAACGCTCGAGGATATGGGGTTGGTCAGGTACGAAAGTGACGTTTGTACAGTGGAAGAGTTCGAACAGATCAGCCATCAGGAAATAGTGACCGAAGCCTTAGAATACACTGTCGATACAGAAGTCGTAAAAACCGtgcaagaagaagaggaagacgaagaagaagaagaagatgatgatgatgaagaagaagaagaagaggatgaggaggaggaggaggaggaaggagaagtagacgaagaagaagatcaAGAACCAAACCAAATAAATGATGGTAACAACcacttaaataataaatgtcaAACGAACAGCAGGAAATGTACTGTGATATACGAATGCGACATTTGTAACAAAAGGATGCGCAAGAAACTGCAATTTCTCAAGCACAGACAGAACCACGATAGGAACATCGTGGAAATCGGCGGTAGATGCGATGAATGCGACAAGACGTTCGTGGACGATGAGAAATTGAAGAAGCACGTAATCAAGGTGCACCAGAAGGAGAAGCCGTTCCAATGCGTGCTGTGCAACAAGTGTTTCAAGACCGAGGAGTTCCTGAAGACACACCTGAAGCAGCACAACAAACGTTTCACCTGCGACATATGCGGCATCTCGAAGGTCTCCGGATACGATCTGCGTCTGCACAAGAAGAAGCACAACGAGGAATACGTGACCCACTGCGAGATCTGCGACAAGGGCTTCTACACGAACCAGACCCTGGAGCGTCACTTGCTGACGCACACAGGTGAAAAACCTTTCGTCTGTAAGGTTTGCCATACACCGTACGCGAGTGCTGCTTATCTCAACACGCACATGAAATCGCACGGCGAGCGTGAGAAACACAAGTGCAATATTTGTAACTTCGAGAGCTACTGGAAGGCCGCGCTGAAGGTGCATCTGAAAATACACACTGGCGAGAATCTGATCACCTGCGAGATCTGCGGTAAATCGGTGTCAAGCAAGGCGTACCTGCAGATCCACATGCGTATACATTCGGGGGAGAAGCCGCACGTTTGCGAAATGTGCGGCAAAGCTTTCAGCGTACGAAAATACTTGATTGTGCATCTGAGAACTCACACAGGCGAGAGGCCGTACGAGTGCAAGGTGTGCCAGAAAAGGTTCACGCAGCAGGGTTCGTTGAATTCCCATATGAAATCGCATAACGAAAGAAAATGA
- Protein Sequence
- MTIPSRSNRSRTVKSPKEEARSFVLVADDIDNARVARETTPQRCGSCDEEFVTEAALLVHRTEQSILRTRESLRKAAKKYTCDVCRESFARKMQLFRHRRLRCNDSTTIESGKQPKTKEKATRSKRKEQNVSTGPIECNVCHKVFKKKKYLNVHKALHGSPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSAEKPCACEICHKSFGNRVYLRSHMKIHSQPESRKKYRCDICGFETFYSYCYKEHLWTHTGESRVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQVISIEQTKIESIETLEDMGLVRYESDVCTVEEFEQISHQEIVTEALEYTVDTEVVKTVQEEEEDEEEEEDDDDEEEEEEDEEEEEEEGEVDEEEDQEPNQINDGNNHLNNKCQTNSRKCTVIYECDICNKRMRKKLQFLKHRQNHDRNIVEIGGRCDECDKTFVDDEKLKKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICDKGFYTNQTLERHLLTHTGEKPFVCKVCHTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEMCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_01065713;
- 80% Identity
- -