Nfab014793.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- -
- Assembly
- GCA_907165295.1
- Location
- OU015689.1:19142913-19146423[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.012 1.2 9.9 5.5 2 23 76 97 75 97 0.97 2 18 4.9e-05 0.0047 17.4 2.1 1 23 99 122 99 122 0.96 3 18 0.0021 0.2 12.3 0.9 1 23 127 150 127 150 0.96 4 18 0.00023 0.022 15.3 2.2 1 23 156 179 156 179 0.95 5 18 0.00087 0.084 13.5 2.0 2 23 186 208 185 208 0.95 6 18 0.0032 0.31 11.7 0.3 1 23 213 235 213 235 0.96 7 18 0.00051 0.049 14.2 0.5 3 23 243 262 242 262 0.98 8 18 4.1e-06 0.0004 20.8 0.1 1 23 268 290 268 290 0.97 9 18 0.00039 0.038 14.6 0.4 1 23 296 318 296 318 0.97 10 18 0.00016 0.015 15.8 0.2 1 23 414 436 414 436 0.98 11 18 0.0078 0.75 10.5 4.0 1 23 438 461 438 461 0.94 12 18 0.0098 0.95 10.2 1.0 1 23 466 489 466 489 0.95 13 18 4.2e-05 0.0041 17.6 1.3 1 23 495 518 495 518 0.96 14 18 0.0011 0.11 13.1 1.5 3 23 526 547 524 547 0.95 15 18 0.0026 0.25 12.0 2.3 1 23 552 574 552 574 0.96 16 18 4.3e-06 0.00042 20.8 0.1 2 23 581 602 580 602 0.97 17 18 2.2e-05 0.0021 18.6 0.1 1 23 608 630 608 630 0.97 18 18 0.00071 0.069 13.8 0.4 1 23 636 658 636 658 0.97
Sequence Information
- Coding Sequence
- ATGATTAAGATCCTGGATCCCCTGAGCGATGAATTCAAATCGGATTCCCACTCGAACTCCCTGATAGATTTCCCCGAAGGATACATAAATTGGATCGACGAGGAGAACTTCGATGTCGTGTCCGAGAACCAAGAAGAGAACGACCTGGACAATCTACCAGAAACAAACGCCAGACTGTGGCTGTCGGGCAACTCCAACGATCAATGCGAAAAGAAAGTTCGCTTAGAATGCGACCACTGTCGACGCAAGTTCCTGAAGAAGAGCCACCTGGCCGAGCACTTGAAGAAACACCGTCACAAATGCCCCGACTGCCCGAAGACCTTCAGGCTTCGCCGATACCTGTCCTCTCACGTGGAAAAACTTCACCGCCGTCAGCTGTACGATTGCAGCGTTTGCGAGTACAAGAGCAACAACAAAGGCACCCTGAAGAACCATTACATCCGTCTGCACACGACGAGCTACAATTTCGCATGCGACACTTGCGGCAAGCAGTTCAAAATCAAGAAAGCGCTGAACCACCACGTGAAACAGAATCACAGCGACGCACCGCCCATAGTGTGCGACGTTTGCGGTCATTTCAGTAAAAATCTGCACGCGTTGAAGGCCCATATGAAGTACAGGCACTACAAGCCCGAGTTCGTCTGTCGAATCTGTCGAAGGGGCATGACTACGCAGGAAAATCTCGAGCAGCATTTAACGTGGCACGAGACGAGGGAGAAGGTGTTGTGCCCCACCTGTGGGAAGAGGTTCAGGGGTCGCGATCTTGACTCTCACATGCGAGTGCATACGGGCGTGAAACCGTTTCCCTGTCCCGTTTGCGGGAAATCCTTTCGAAGGCAAACTGCTCAGGAGCAACACGTATTGATTCACACGGGGAAGAGGCCGTACGTCTGCGACATTTGTGGCCAGGCGTTCGCACAGAAGCCGGGGCTAATTTGCCACAGGAAACGTCATCCTGGACCGTTGCCGCCATTGCCCGTCGTCTCGATCAAGAATATCGTGACGGAGTTCACGAAGGACTCCCCGCAAGATCCCCTGAACAGCACCGGGGCGATACCATTGGAGGAGCTGTGCTACATCAAGATCGAAAACTCCTATTCCCTGAACAGAAGGGAACGTAAACGGGAAAGGGACAGGATCAGAAGAATGAAATTAAAAATCCTCGCCAATCCGTCTCGGAGCCCGACAGCGTCGAAGATCCTCGAAACAATAACGCCAAAGAAAGAAACCGATCAGCTGTACGAGTGTGACTTCTGCGGCGATCAATTCGACCGGAAACCGTACCTGGTGGCACACATGAAGATACACAAGCACCGTTGCAGGACCTGCAATCAAACGTTCAAGCTGAGGAAAGACTTGAAACTGCACACGCTGCAGGTCCACGGACCGGTGTTGTATCCGTGCACCATCTGCGAGTACAAGAGCAACAATAGATGGACGCTGAAAGACCATTTCATCAGGAAGCACACGAGCAGCTTCGAGTACTCGTGCACGATTTGCGGGAAGCAGTTCAAAATCAAGAACGATCTGTTGCAGCATACGAAACAGATGCACAGCAACGCGCCGCCCATTATTTGCACGGTGTGCGGCCATGCCTGCAAAAGTGTGCCCTCGTTGAAGGCGCACATGAAGTACAGACACTACAAGCCTGCGTACGAGTGCAGCTTATGCAAACGTTGCATGACGACACAGAAGAACCTGGAGTTGCACACGATATGGCATCAGACGAAGGAGAAGGTTGTTTGCCCGACATGCGGCAAGACCTTCGGGCAGAAGAGGGATTTGGATCTTCATTTGAGGATCCACGAGGGCATCAGGCCGTTCGCCTGTCCCGTTTGTGGGAAGAAGTTCCCTAGAAGAACCGCCCAGGAACAGCACATACTGATACACACGGGACAACGGCCGTACATTTGTGATATATGCGGACAGGCGTTTGCTCAGAAGCCGGGACTGATCTGCCACCGGAAGCGTCATCCTGGACCCCTACCGCCGCTTCCTGTGGTCTCTATTAAGAAGATCATCGCGGACTTCACTCAGGGATTGAACGACGCGACGACGGAGAAGAAGGAGAATTGA
- Protein Sequence
- MIKILDPLSDEFKSDSHSNSLIDFPEGYINWIDEENFDVVSENQEENDLDNLPETNARLWLSGNSNDQCEKKVRLECDHCRRKFLKKSHLAEHLKKHRHKCPDCPKTFRLRRYLSSHVEKLHRRQLYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDSPQDPLNSTGAIPLEELCYIKIENSYSLNRRERKRERDRIRRMKLKILANPSRSPTASKILETITPKKETDQLYECDFCGDQFDRKPYLVAHMKIHKHRCRTCNQTFKLRKDLKLHTLQVHGPVLYPCTICEYKSNNRWTLKDHFIRKHTSSFEYSCTICGKQFKIKNDLLQHTKQMHSNAPPIICTVCGHACKSVPSLKAHMKYRHYKPAYECSLCKRCMTTQKNLELHTIWHQTKEKVVCPTCGKTFGQKRDLDLHLRIHEGIRPFACPVCGKKFPRRTAQEQHILIHTGQRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKKIIADFTQGLNDATTEKKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141961;
- 90% Identity
- -
- 80% Identity
- -