Alab035152.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- -
- Assembly
- GCA_014066325.1
- Location
- JACEOM010004364.1:6774495-6777606[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0021 0.41 12.2 3.4 2 23 70 91 69 91 0.97 2 18 2.3e-05 0.0044 18.4 1.2 1 23 93 116 93 116 0.96 3 18 0.002 0.38 12.3 0.9 1 23 121 144 121 144 0.96 4 18 0.00019 0.037 15.5 3.0 1 23 150 173 150 173 0.96 5 18 0.00083 0.16 13.5 2.0 2 23 180 202 179 202 0.95 6 18 0.004 0.77 11.3 0.3 1 23 207 229 207 229 0.96 7 18 0.00048 0.092 14.2 0.5 3 23 237 256 236 256 0.98 8 18 3.9e-06 0.00075 20.8 0.1 1 23 262 284 262 284 0.97 9 18 0.00037 0.071 14.6 0.4 1 23 290 312 290 312 0.97 10 18 1.6e-06 0.00031 22.0 2.1 1 23 412 434 412 434 0.98 11 18 0.0013 0.26 12.8 4.2 1 23 436 459 436 459 0.93 12 18 0.0093 1.8 10.2 1.0 1 23 464 487 464 487 0.95 13 18 0.00083 0.16 13.5 0.6 1 23 493 516 493 516 0.95 14 18 0.0011 0.21 13.1 1.5 3 23 524 545 522 545 0.95 15 18 0.0032 0.6 11.7 2.6 1 23 550 572 550 572 0.97 16 18 4.1e-06 0.00078 20.8 0.1 2 23 579 600 578 600 0.97 17 18 1.1e-05 0.002 19.5 0.1 1 23 606 628 606 628 0.98 18 18 0.00051 0.096 14.2 1.5 1 23 634 656 634 656 0.98
Sequence Information
- Coding Sequence
- ATGCGTTCAATTTTCTGTTTTAGAATTTTGGATCCTCTGAGCGAGGAATTCAAGCCGGAACAATCTCTCTCCTCGTTGGAGTTCCCTGATGGATACGTGAATTGGATCGGCAAAGAGAACTTCGAGATAGTATCCACGAATCAGGAAGGGAACAACGTGGAATCTCTTCGACCCGATCAAGCAAAGAAGAAGACTATAACTCGTCTAGAGTGCGACCACTGTCGACGCAAGTTCCTCAAGAAGAGTAACCTGGCCGAGCACTTGAAGAAGCACAAGCACAAGTGTCCTGATTGCCCGAAAACTTTCAGACTTCGTCGATACCTGGCCTCTCACGTGGAAAAGATCCATCGACGCCAAGTGTACGATTGTAGCGTTTGCGAGTACAAGAGCAACAACAAAGGCACCCTGAAGAACCACTACATCCGCCTGCACACGACCAACTACGATTTCTCTTGCGACACCTGCGGCAAGCAATTCAAGATAAAGAAAGCGTTGAATCATCACGTGAAGCAGAACCACAGCGATGCACCTCCAATAGTGTGCGACGTCTGCGGCCATTTCAGCAAGAATCTCCACGCTTTGAAGGCCCACATGAAGTACAGACACTACAAGCCTGAGTTCATATGTCAAATCTGCAGAAGAGGCATGACCACTCGGGAGAATCTGGAGCAACATTTGACTTGGCACGAGACGAGGGAGAAGGTATTGTGCCCCACTTGCGGAAAGAGGTTTAGAGGCCGGGATTTGGACTCTCACATGAGAGTGCACACCGGGGTCAAACCATTCCCCTGCCCTGTATGCGGGAAATCGTTCAGAAGGCAGACTGCTCAGGAGCAGCACGTGCTTATCCACACAGGGAAGAGGCCATACGTTTGCGACATTTGTGGCCAAGCGTTCGCCCAGAAACCGGGCCTTATTTGTCACAGGAAACGCCATCCTGGACCATTGCCACCTTTGCCTGTCGTTTCGATAAAGAACATCGTCACCGAGTTCACTAAGGATTCACCTGATCCATTGAACGGAAGCGAAGCGAATCCTTTGGAAGATGGTTCATGCGCCATCAAGATAGAGAACTCGTACACGTTGGCGAAGAAGGAACGAAGGAATCGAAATCAAAGGGACGTGAGAGCGAGGAAAAGGACGAGATCGAAGATCGACTCGATCGCGTCCCCGACTTGCAAAGCTAAGAAACCCATCGAATCGAGGAAAGCAAGGAGAGAGGCCGAGTCACTTTTTGAGTGTGACTTTTGCGGTAAACAGTTCAACCGGAAATCGTTCTTGGCGTCTCACATGAAGCAGCACAGGCACCGTTGCAAGACCTGTAACCAAACCTTCAGATTGAGGAAAGACTTGAAGCAGCACACGGAACAAGTGCACGGGCCGGTGTTGTACCCTTGCACCATCTGCGAGTACAAGAGCAACAACAGGTGGACGTTGAAGGATCATTTCATTCGAAAGCACACGAGCAGTTTCGACTATTCGTGCTCCGTTTGCGGGAAGCAATTCAAGATAAAGAACGACATGGTGCAACACGCGAAGCAAATGCACAGCAATGCACCGCCCATTATTTGCACCGTGTGCGGCCACGCGTGCAAGAGCGTGCCCTCTTTGAAGGCCCACATGAAATACAGGCATTACAAGCCGGCGTTCGAGTGCAGCTTGTGCAAACGATGCATGACCACTCAATACAACCTTGACCAGCATTTGCTGTGGCacgagaaaaaggagaaggtCGTGTGCCCCACCTGCGGCAAGACCTTCGGCCAGAAGAGGGATTTGGATCTTCATCTGAGGATCCACGAGGGCATCAGGCCGTTCTCTTGCCCTGTCTGCGGCAAAAAGTTCCCGAGGCGGACTGCTCAGGAGCAACACATACTGATACACACCGGCCAGAGGCCGTACACTTGTGATATATGCGGGCAGAAGTTTGCTCAGAAGCCGGGATTGATCTGTCACAGGAAGCGGCATCCTGGACCCCTACCACCCCTCCCTGTCATCTCTATTAGGAAGATTATCGCGGATTTTACTCAGGGATTAAATGATGCGACGatagagaaaaaggagaattgA
- Protein Sequence
- MRSIFCFRILDPLSEEFKPEQSLSSLEFPDGYVNWIGKENFEIVSTNQEGNNVESLRPDQAKKKTITRLECDHCRRKFLKKSNLAEHLKKHKHKCPDCPKTFRLRRYLASHVEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTNYDFSCDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICQICRRGMTTRENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDSPDPLNGSEANPLEDGSCAIKIENSYTLAKKERRNRNQRDVRARKRTRSKIDSIASPTCKAKKPIESRKARREAESLFECDFCGKQFNRKSFLASHMKQHRHRCKTCNQTFRLRKDLKQHTEQVHGPVLYPCTICEYKSNNRWTLKDHFIRKHTSSFDYSCSVCGKQFKIKNDMVQHAKQMHSNAPPIICTVCGHACKSVPSLKAHMKYRHYKPAFECSLCKRCMTTQYNLDQHLLWHEKKEKVVCPTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPPLPVISIRKIIADFTQGLNDATIEKKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01065715;
- 90% Identity
- -
- 80% Identity
- -