Basic Information

Insect: Noctua pronuba
Gene Symbol: -
Assembly: GCA_905220335.1
Location: LR999922.1:5454921-5458196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.9 83 4.6 0.2 3 23 36 57 34 57 0.87

2 17 0.9 83 4.6 0.2 3 23 85 106 85 106 0.89

3 17 0.081 7.5 7.9 1.7 2 23 129 150 128 150 0.95

4 17 1.1e-06 0.0001 23.3 0.9 1 23 154 177 154 177 0.94

5 17 0.38 36 5.8 0.2 3 20 183 200 182 202 0.90

6 17 0.0089 0.82 10.9 2.8 1 23 209 232 209 232 0.93

7 17 0.0011 0.099 13.8 1.5 1 23 241 264 241 264 0.94

8 17 0.038 3.5 9.0 0.2 1 17 269 285 269 286 0.91

9 17 0.36 33 5.9 0.3 2 23 319 341 318 341 0.94

10 17 3.1 2.9e+02 2.9 2.2 3 23 367 388 362 388 0.87

11 17 1.2e-05 0.0011 20.0 0.4 1 23 436 459 436 459 0.96

12 17 0.042 3.9 8.8 0.5 3 20 466 483 465 485 0.93

13 17 4.3 4e+02 2.5 6.7 3 23 494 515 492 515 0.90

14 17 0.032 3 9.2 2.6 1 23 522 545 522 545 0.94

15 17 0.0018 0.16 13.2 2.0 1 23 550 572 550 572 0.96

16 17 5.1e-06 0.00047 21.2 0.4 1 20 578 597 578 600 0.94

17 17 1.7e-05 0.0016 19.5 3.1 1 23 606 629 606 629 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.9	83	4.6	0.2	3	23	36	57	34	57	0.87
2	17	0.9	83	4.6	0.2	3	23	85	106	85	106	0.89
3	17	0.081	7.5	7.9	1.7	2	23	129	150	128	150	0.95
4	17	1.1e-06	0.0001	23.3	0.9	1	23	154	177	154	177	0.94
5	17	0.38	36	5.8	0.2	3	20	183	200	182	202	0.90
6	17	0.0089	0.82	10.9	2.8	1	23	209	232	209	232	0.93
7	17	0.0011	0.099	13.8	1.5	1	23	241	264	241	264	0.94
8	17	0.038	3.5	9.0	0.2	1	17	269	285	269	286	0.91
9	17	0.36	33	5.9	0.3	2	23	319	341	318	341	0.94
10	17	3.1	2.9e+02	2.9	2.2	3	23	367	388	362	388	0.87
11	17	1.2e-05	0.0011	20.0	0.4	1	23	436	459	436	459	0.96
12	17	0.042	3.9	8.8	0.5	3	20	466	483	465	485	0.93
13	17	4.3	4e+02	2.5	6.7	3	23	494	515	492	515	0.90
14	17	0.032	3	9.2	2.6	1	23	522	545	522	545	0.94
15	17	0.0018	0.16	13.2	2.0	1	23	550	572	550	572	0.96
16	17	5.1e-06	0.00047	21.2	0.4	1	20	578	597	578	600	0.94
17	17	1.7e-05	0.0016	19.5	3.1	1	23	606	629	606	629	0.97

Sequence Information

Coding Sequence: ATGTTACAAGAGTTCGATCCGTTGGTCGAAGCCAGACATAATGCTAAGCTCGTTCTGAGATACACAACCGCTTACCCATTCAGGATACCCTCTCACGAAATGGTGTGTGTTTACTGCTGCGACGCTTTCGAAGACCCGGCGGCTTACAGAGACCACATGAAAAAAGACCACTACCAACCCATCGTCAAACATGCTTTCTCACACGCCGTGGGAACAGAAGAATACCTCAAAGTTGATTGCACGGATCTAGGATGCAAAATCTGCGCTAAAAAGTTCGATTCTATCACGTCCATATCGGAACATCTCGCCTTAGAACATGACAAGCAATTAAATCTTGACGCAGAGATCGGGTTGCAAATCTTCAAGTTAGGGGCCGAAAGATGGGTTTGTGCGACTTGCTTCCAAAAGTTTCCGTCTCTCAGATGCTTATCGAGGCATACTAACGGGCACTATCACAAGTATACATGCGAGACTTGTGGTAGATCATACATCAGTCGAGACAACTTGAAAAGGCATATCCTATTCAGTCATACCGAGGAAAAGTTTTGTGTGAAGTGTCGAAAGTCCTTTCCTAATATCAAAGAGCGCCGTGCTCATGTATTGGAAAGCAAAAGATGCTGGCCATTCTGCTGTACTGTTTGTGGACACAGATTTGTCTCGAGAAAGCTGAGACAGGAGCACATGGCAGAAGCCCATAATGTAGAAATCAAAAATAAACTCTACAATTGCCCTGAGTGCCAGGAATCTTTCACGGAATATGGACATTACAGATCACACTTCATAATCACTCATACGGACGATAACTACGTCTGCCAATTCTGCGGAATAAAATTCGCGAGTAAAAGCCGTTTGGAAGAGAAGCAAAATGACCCGAATTTCATCTCGAAACGGAACGCCGAGATTATTGTGAAATATTCCACCGTTTACCCGTTCAAGCTGCCTGAAGACAACATGGTTTGTGTTTACTGTTGCGAGACCTACCCGGACCCCGATGTCTTTAGAACGCATATGAACGAGGAACACGAGACTTTCAACCCCAAAATGGCCTTCGTACATTGTTCCGAAGGATACATTAAAGTTGACTGCACTAATATCAATTGCAGACTCTGTTTCAAACACTACCAGAATTTGGATCAAATCGCAGACCACCTCTTGTCCGAACATAAAAAGCCTATTAACCTAACCGTAGCGTTAGGTCTACAACCTTTCAAGTTAGAACACAATAAGCTTTTCTGTGCAATATGCCACTACAAAGCCGTATGCTTGCGACAGTTATCCCGTCACACACAGAGCCATTTCTGGAGGTATACTTGCGAAGCCTGCGGAAAATCATATGCAACCAACACAGCATTGCGCAGTCATATAAGATTCTCGCACATTGGCGACGAAAAGATATGCCGCAAGTGCAAACGCACTTTCAGCTCTATAGAGGAGAGACGGAAGCATTTACTGGAGTCGCGGAAATGCTGGTCTCATCTATGCTGTGTTTGTGGCGAAAGATTTATGTCCTGGCATGCCAAACAACAACACTTGACGGAGTGCCATAGCGTTGAAAAGAAAGTTTACGTGTGCCCGGAATGTGGGCAAATTTACCATGAGCGCAAGAAGTACAGGACACATTTTAAACTTAATCACACCGATGATAATTACGTGTGCTCTTGCTGCGGTATGAAATTCGTTACCAAAAAGAATCTGGAGGAACACAGAGTTTCTCATACCATGGAGAAACTCTTTCCGTGCACGGTGTGCTCCAAATCGTTTCCGAGGAAGAAGAATTTGATTCAGCATATGTGGATTCATATGGAACATAAACGGTTTGAATGTAAGCTATGTAATAAGAAGTTTAATCAGAAAGTTAGTTGGAAGACGCATATGAAATCGTATCATCCCGAGTTAGAGGGTATTGAGGAAAAAAATAACGATAATAATCTAAAATTAGTGTTTTCTGTTTTATCCGAATAA
Protein Sequence: MLQEFDPLVEARHNAKLVLRYTTAYPFRIPSHEMVCVYCCDAFEDPAAYRDHMKKDHYQPIVKHAFSHAVGTEEYLKVDCTDLGCKICAKKFDSITSISEHLALEHDKQLNLDAEIGLQIFKLGAERWVCATCFQKFPSLRCLSRHTNGHYHKYTCETCGRSYISRDNLKRHILFSHTEEKFCVKCRKSFPNIKERRAHVLESKRCWPFCCTVCGHRFVSRKLRQEHMAEAHNVEIKNKLYNCPECQESFTEYGHYRSHFIITHTDDNYVCQFCGIKFASKSRLEEKQNDPNFISKRNAEIIVKYSTVYPFKLPEDNMVCVYCCETYPDPDVFRTHMNEEHETFNPKMAFVHCSEGYIKVDCTNINCRLCFKHYQNLDQIADHLLSEHKKPINLTVALGLQPFKLEHNKLFCAICHYKAVCLRQLSRHTQSHFWRYTCEACGKSYATNTALRSHIRFSHIGDEKICRKCKRTFSSIEERRKHLLESRKCWSHLCCVCGERFMSWHAKQQHLTECHSVEKKVYVCPECGQIYHERKKYRTHFKLNHTDDNYVCSCCGMKFVTKKNLEEHRVSHTMEKLFPCTVCSKSFPRKKNLIQHMWIHMEHKRFECKLCNKKFNQKVSWKTHMKSYHPELEGIEEKNNDNNLKLVFSVLSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00111913;
90% Identity: -
80% Identity: -