Basic Information

Insect: Noctua janthina
Gene Symbol: -
Assembly: GCA_963576755.1
Location: OY755077.1:3172666-3185360[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.6 6.8e+02 1.7 0.3 1 22 219 240 219 242 0.69

2 14 1.8 1.4e+02 3.9 0.3 5 21 306 322 304 323 0.92

3 14 0.0047 0.37 12.0 0.3 1 23 334 357 334 357 0.95

4 14 0.0046 0.37 12.0 3.3 2 20 395 413 394 415 0.93

5 14 1.2 98 4.4 1.7 1 23 420 442 420 442 0.97

6 14 0.61 48 5.4 1.0 1 20 690 708 690 709 0.89

7 14 0.13 11 7.4 0.2 2 23 750 771 749 771 0.96

8 14 4.3 3.4e+02 2.7 1.0 1 23 794 815 794 815 0.80

9 14 0.00096 0.076 14.2 0.2 2 23 892 913 891 913 0.97

10 14 5.5e-07 4.3e-05 24.4 2.7 1 23 919 941 919 941 0.99

11 14 2.8e-05 0.0022 19.0 0.3 3 23 948 968 946 968 0.96

12 14 0.0029 0.23 12.7 1.2 2 23 975 997 974 997 0.96

13 14 2.2 1.7e+02 3.6 0.3 1 20 1004 1023 1004 1027 0.89

14 14 0.00087 0.068 14.3 1.0 3 23 1036 1057 1035 1057 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.6	6.8e+02	1.7	0.3	1	22	219	240	219	242	0.69
2	14	1.8	1.4e+02	3.9	0.3	5	21	306	322	304	323	0.92
3	14	0.0047	0.37	12.0	0.3	1	23	334	357	334	357	0.95
4	14	0.0046	0.37	12.0	3.3	2	20	395	413	394	415	0.93
5	14	1.2	98	4.4	1.7	1	23	420	442	420	442	0.97
6	14	0.61	48	5.4	1.0	1	20	690	708	690	709	0.89
7	14	0.13	11	7.4	0.2	2	23	750	771	749	771	0.96
8	14	4.3	3.4e+02	2.7	1.0	1	23	794	815	794	815	0.80
9	14	0.00096	0.076	14.2	0.2	2	23	892	913	891	913	0.97
10	14	5.5e-07	4.3e-05	24.4	2.7	1	23	919	941	919	941	0.99
11	14	2.8e-05	0.0022	19.0	0.3	3	23	948	968	946	968	0.96
12	14	0.0029	0.23	12.7	1.2	2	23	975	997	974	997	0.96
13	14	2.2	1.7e+02	3.6	0.3	1	20	1004	1023	1004	1027	0.89
14	14	0.00087	0.068	14.3	1.0	3	23	1036	1057	1035	1057	0.96

Sequence Information

Coding Sequence: ATGGCCGATACATCTAGAAAAAGGTCGAGAAAATCGAAGTTAGTGCCTCGTGAGTGTGCTGTGTACGAAGATGATCTTGAATTGCAGCTTCCAGTAGCGAAAATACCTAAAAAGCCTAGCCCACCTATCACCTACGTTAAACCGAAAACGACtaaaaaagtttttagagaACCACAACTTATCCTTACAAAACTAGAAGAAACAACGTTTTCAACAACTCAAGAAGTTGACACAAGCGTTCTAAGAAAAATCAACGCATCCTCAGCTAAAGAAGATAtcgaaccaaaaataaaatcatcaccAAGAAAATTCGAGATTAATATTGAGGTGGAATCTTGCGATGGCGATGATGACGAATTCGCTAGCATAAGAGTCGAAAATGAATTGACACCAGCTAAAGACGTACCCAGTACAAAGACACATATAACACCTATATCGCTCTCTCGAGAACACATACTTGATGAAGCTGACAACATACTAGAAACTTCTACAAAGGTCGCTGATAAAATCTTAAACACCTACCTAAGGAATACGATAGGCTATGAACAGAAAGAAAAGCTGAAGAACGAGGGGTTTGAAAATCGAATCCAGGCAGCATTAGACGAGTGGAAGATATGGCAGTTCCGCAGTTTTCACAGAGAAGACCCTCTGTTCTACAAATGTTATATCTGTACTAGATCCTGGTGGCTTCTGTCTGATTTCCGCAGCCATCTGTCTTCAGCACACCCAAATGACAAGATGATCAAGATCGTTTTGGAGAAGTACGAAATGCATGAGGCTAATTTAATAGCGTACCATGAAAGGCTTGTTGTGGTTAAAGACATATACACTGAAGGTCTTTGTCACCGTTGCGGTAAAGACTATGCTGCACATGAATTAGAAGACAGATACGAGCAAAAGTTTTACAAGAACAAAGGATGCTCTAAGCAGTTTTTTACTTGCATGGGTCTCAGAGATCATATACAGTCTTGCCCTGTATGTAAAATGGAGGATAAGCCATACAAATGTGACATTTGTAAGTCAAGATTTGACACAGAAGATGACGTGACAAATCATTTAGTGATGTCTCACTCGGTTCGGTCTGATATACCAATCATGACCCATAATAAGGACTGTAAGAAGTGttcagaaaaatatatttgtagatTCTTGCACAAATGTTGGCAACAGGTCCCTCATTGCGAATGCCCTCATTGCTTCAGAACGTTCTCAAACACCATGTCCTTAGAACTCCATATGGAACATTCGAATATACCTTATGAATGTGAAGTTTGCGATGTAGTGATGAGGTATAGCTGCAAGAAATTTGAGCATATGTTGACTCACACCGACAAGTATATGGCTGTGAGGAAATGTGATAAATGTAAGGGCCTGAATGTGTTTCTGAGCAATGATGATGCTGCAGCTCATTCGGAATTGGAACATGAGTTAGAGGATACACAACAACAAATATCTTTTCCGAAACTTATAGTACCATCGTCCTGTGTATATAAAAGCTTAGCGGAATCTGAAATGGCAGAACAAGAAGCGTTGGAAGAACAAGAAGAATTGGCAGAAGAACAAAAATCGCAACTGACAGAAGAAGAATTGGTACCAGCATATGAACAGAGATTACATGACTTGCAAGAATCAACAACAGACTTTGTAATGGATGACGTTGTTGTCAAAgAAGAACCAGAAGACTACGAAGATAGTCCAAGACTTATAATCAAGGAAGAACCTTTAGACGAAGCAGAAAGCCAAATAGAAGACGAAGAAATTGAAACAGACAACTTTGAACACCAAATAACCGTGAAAAAAGAATTTATTGAACAAGAAGAAGATATAGATGTAGAAGACGAATATGATGGAGACAtaataaaactcaactttaacaTCGAAGACTTGTTGGTGAAGCAAGAATCTATTCTTGAAGATGAAGGAGAAGAATATTCCCAACAACAAACAGAAACCCAAACAGAAGATGATGAAGATTCACAAGACTTTCCTAGACCGgtgaaagaagaagaatctATGTTAGAACCAGAAGTTATCATCCGAAGAGGtggtaaaaagaaagaaaacaaataccGTTGCACAAAATGTGGTTTTACAGCAAACCATAAACAGTACAGAGCTCATATCGAGTTTGACTGTCTCAAGAACCCGATCAAACATAGAGACTACTTCTGTACAAAATGCAATTGCATATTTAGTACCATGAAGAAATATTTATGTCACTTTGAAAAGCACGGGTATCAACATAAATCGTGCCCGGAGTGTTTGAATAAATTTGAAAACTACTCAGTTCTAGCTTCACATGTGCAGTCGCATATTAAACAGAACTTTGTGCGAGTGAAAATGATTACGCATGCagGTCAAGCAATGACAAAACCTGACTTTCAATGCAAGAAATGTACCGAAACAATATCTTTGAACCAGTTCTTTGAACACTGGGAGCTACACATTAACGCTCAGCCTACGCACCCTATAAAGGTGACATCCAGGCCTCCGCTGAAACGGGGAGAACTACATGAAACTATTATAAAGGAGTGCATTGCCCGTCTCCACAAATCTCCAAAAGAATGCAACCATTGCCACCGTTGGTTCAAGCGCGTCAACGAATGCAAGAGGCACATCATTGAACACCTTCTAGTGGACGCTTACAACCAGAAACACATATTCCACGAGCTCAAATGCCAAATATGTGAAACTGGCTTTGCTGTGCCGGAGAAATATAAGCAACACATGCGAGATCATGCGTCTTTACCTGTCTATAAGTGTGAATTGTGTGATAGGACATTCAGTGATTCAAGTAACTTTACCAAACATAAAAAAGTGCATAATTTGAGAGTGATTATTTGTGATTTATGCGGCAAGAAGTTCCAGTCTAAGGTGTCTTTGGAGAAGCATATCGAGAAACATAAAACCACAGCGCCAATCACTTGCGAGCTATGCAACAAAATCTTCTACTTCGACACTTCGTATCGCCGACATATACGATACTATCATGAAAAGACCACACATGGATTCCGCTGCATTAACTGTGGACAACGATTCAACAGCTTAAAGGCGAAATGGGACCATATGTGGAGTGTCCACAAGGAACGAAAGCAAAAAGCCGACTGTCCGATATGCCACGAGTCTTTCCGAAAATTTTCCGATGTCCGCGCTCATGCTAGGAACAATCATTTAATGGAGGTTTCCGTGCTAAGCGTCAAAAAAGCGAGCAATAAAGCGGTTAATGTAGATAAGTTTTTGAGTGATGCGACGACTATCAAAGTCGGTAGATCGGAGACTTTGGTTGTCTTTGATTCTGATTAG
Protein Sequence: MADTSRKRSRKSKLVPRECAVYEDDLELQLPVAKIPKKPSPPITYVKPKTTKKVFREPQLILTKLEETTFSTTQEVDTSVLRKINASSAKEDIEPKIKSSPRKFEINIEVESCDGDDDEFASIRVENELTPAKDVPSTKTHITPISLSREHILDEADNILETSTKVADKILNTYLRNTIGYEQKEKLKNEGFENRIQAALDEWKIWQFRSFHREDPLFYKCYICTRSWWLLSDFRSHLSSAHPNDKMIKIVLEKYEMHEANLIAYHERLVVVKDIYTEGLCHRCGKDYAAHELEDRYEQKFYKNKGCSKQFFTCMGLRDHIQSCPVCKMEDKPYKCDICKSRFDTEDDVTNHLVMSHSVRSDIPIMTHNKDCKKCSEKYICRFLHKCWQQVPHCECPHCFRTFSNTMSLELHMEHSNIPYECEVCDVVMRYSCKKFEHMLTHTDKYMAVRKCDKCKGLNVFLSNDDAAAHSELEHELEDTQQQISFPKLIVPSSCVYKSLAESEMAEQEALEEQEELAEEQKSQLTEEELVPAYEQRLHDLQESTTDFVMDDVVVKEEPEDYEDSPRLIIKEEPLDEAESQIEDEEIETDNFEHQITVKKEFIEQEEDIDVEDEYDGDIIKLNFNIEDLLVKQESILEDEGEEYSQQQTETQTEDDEDSQDFPRPVKEEESMLEPEVIIRRGGKKKENKYRCTKCGFTANHKQYRAHIEFDCLKNPIKHRDYFCTKCNCIFSTMKKYLCHFEKHGYQHKSCPECLNKFENYSVLASHVQSHIKQNFVRVKMITHAGQAMTKPDFQCKKCTETISLNQFFEHWELHINAQPTHPIKVTSRPPLKRGELHETIIKECIARLHKSPKECNHCHRWFKRVNECKRHIIEHLLVDAYNQKHIFHELKCQICETGFAVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLRVIICDLCGKKFQSKVSLEKHIEKHKTTAPITCELCNKIFYFDTSYRRHIRYYHEKTTHGFRCINCGQRFNSLKAKWDHMWSVHKERKQKADCPICHESFRKFSDVRAHARNNHLMEVSVLSVKKASNKAVNVDKFLSDATTIKVGRSETLVVFDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01063304;
90% Identity: iTF_01062353;
80% Identity: -